Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005269 17 2528 NP_001001996 17 2528 NP_001001995 17 2528 NP_001001994 17 2528 NP_722576 17 2528 XP_005262424 17 2528 XP_005274547 17 2528 XP_005274546 17 2528 NP_694983 17 4312 NP_001273567 17 4312 NP_001230178 17 4312 NP_001230176 17 4312 NP_001034565 17 4312 NP_001070818 17 4312 NP_001230177 17 4312 XP_006719861 17 4312 XP_006719860 17 4312 XP_006719859 17 4312 XP_006719858 17 4312 NP_001036040 16 5631 XP_006713677 16 5631 NP_660333 16 7355 XP_005248194 16 7355>NP_005269 Length = 265 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YTTSAIK 9 YTTSA+K Sbjct: 111 YTTSAVK 117>NP_001001996 Length = 305 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YTTSAIK 9 YTTSA+K Sbjct: 151 YTTSAVK 157>NP_001001995 Length = 328 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YTTSAIK 9 YTTSA+K Sbjct: 151 YTTSAVK 157>NP_001001994 Length = 246 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YTTSAIK 9 YTTSA+K Sbjct: 92 YTTSAVK 98>NP_722576 Length = 3080 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVYTTSAIK 9 VV TTSAIK Sbjct: 384 VVSTTSAIK 392>XP_005262424 Length = 2875 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVYTTSAIK 9 VV TTSAIK Sbjct: 179 VVSTTSAIK 187>XP_005274547 Length = 269 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YTTSAIK 9 YTTSA+K Sbjct: 92 YTTSAVK 98>XP_005274546 Length = 288 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YTTSAIK 9 YTTSA+K Sbjct: 111 YTTSAVK 117>NP_694983 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VYTTSAIK 9 +YTTSA K Sbjct: 116 IYTTSASK 123>NP_001273567 Length = 292 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VYTTSAIK 9 +YTTSA K Sbjct: 53 IYTTSASK 60>NP_001230178 Length = 544 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVYTTSAIK 9 V+ TTSA+K Sbjct: 260 VIKTTSAVK 268>NP_001230176 Length = 491 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVYTTSAIK 9 V+ TTSA+K Sbjct: 207 VIKTTSAVK 215>NP_001034565 Length = 390 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVYTTSAIK 9 V+ TTSA+K Sbjct: 106 VIKTTSAVK 114>NP_001070818 Length = 569 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVYTTSAIK 9 V+ TTSA+K Sbjct: 285 VIKTTSAVK 293>NP_001230177 Length = 544 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVYTTSAIK 9 V+ TTSA+K Sbjct: 260 VIKTTSAVK 268>XP_006719861 Length = 286 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VYTTSAIK 9 +YTTSA K Sbjct: 37 IYTTSASK 44>XP_006719860 Length = 355 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VYTTSAIK 9 +YTTSA K Sbjct: 116 IYTTSASK 123>XP_006719859 Length = 364 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VYTTSAIK 9 +YTTSA K Sbjct: 116 IYTTSASK 123>XP_006719858 Length = 365 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VYTTSAIK 9 +YTTSA K Sbjct: 116 IYTTSASK 123>NP_001036040 Length = 717 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VVYTTSA 7 +VYTTSA Sbjct: 34 LVYTTSA 40>XP_006713677 Length = 717 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VVYTTSA 7 +VYTTSA Sbjct: 34 LVYTTSA 40>NP_660333 Length = 1321 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VVYTTSAI 8 VVYTT+ I Sbjct: 762 VVYTTAII 769>XP_005248194 Length = 833 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VVYTTSAI 8 VVYTT+ I Sbjct: 762 VVYTTAII 769Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.121 0.297 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 367,768 Number of extensions: 322 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |