Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1935 NP_001035957 18 1935 XP_006721991 18 1935 XP_006721990 18 1935 XP_006721989 18 1935 XP_005258041 18 1935 XP_006721988 18 1935 XP_006721987 18 1935 XP_006721986 18 1935 XP_005258040 18 1935 XP_006721985 18 1935 NP_001036216 17 2528 NP_005853 17 2528 NP_001036214 17 2528 NP_006594 17 2528 NP_001036215 17 2528 NP_001269347 17 2528 XP_006724791 17 2528 XP_005262418 17 2528 XP_005262417 17 2528 XP_005262416 17 2528 XP_005262415 17 2528 XP_006724790 17 2528 XP_005262414 17 2528 XP_006713534 17 2528 NP_001269645 16 5631 NP_036579 16 5631 NP_001269646 16 5631 NP_001269647 16 5631 NP_115964 16 5631 NP_001073922 16 5631 XP_006725304 16 5631 XP_006725303 16 5631 XP_005255699 16 5631 XP_005255698 16 5631 XP_005250173 16 5631 NP_003840 16 7355 NP_001005168 16 7355 NP_001005167 16 7355 NP_004906 15 9605 NP_997511 15 9605 NP_058198 15 9605 NP_997512 15 9605 NP_997510 15 9605 NP_997057 15 9605 NP_689854 15 9605 NP_079357 15 9605 XP_006719336 15 9605 XP_006719335 15 9605>NP_000258 Length = 2818 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1076 VVSLLAGL 1083>NP_001035957 Length = 2839 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1076 VVSLLAGL 1083>XP_006721991 Length = 1632 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1086 VVSLLAGL 1093>XP_006721990 Length = 2823 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1086 VVSLLAGL 1093>XP_006721989 Length = 2823 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1086 VVSLLAGL 1093>XP_005258041 Length = 2836 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1076 VVSLLAGL 1083>XP_006721988 Length = 2846 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1086 VVSLLAGL 1093>XP_006721987 Length = 2849 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1086 VVSLLAGL 1093>XP_006721986 Length = 2854 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1073 VVSLLAGL 1080>XP_005258040 Length = 2857 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1076 VVSLLAGL 1083>XP_006721985 Length = 2867 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 VVSLLAGL Sbjct: 1086 VVSLLAGL 1093>NP_001036216 Length = 1231 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>NP_005853 Length = 1258 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 203 VISLLTGLS 211>NP_001036214 Length = 1268 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>NP_006594 Length = 1231 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>NP_001036215 Length = 1268 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>NP_001269347 Length = 1231 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>XP_006724791 Length = 1199 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 131 VISLLTGLS 139>XP_005262418 Length = 1231 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>XP_005262417 Length = 1268 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>XP_005262416 Length = 1268 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>XP_005262415 Length = 1268 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>XP_006724790 Length = 1268 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>XP_005262414 Length = 1268 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 200 VISLLTGLS 208>XP_006713534 Length = 1222 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 V+SLL GLS Sbjct: 203 VISLLTGLS 211>NP_001269645 Length = 1225 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 ++SLL GLS Sbjct: 216 LISLLTGLS 224>NP_036579 Length = 1225 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 ++SLL GLS Sbjct: 216 LISLLTGLS 224>NP_001269646 Length = 1226 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 ++SLL GLS Sbjct: 216 LISLLTGLS 224>NP_001269647 Length = 1167 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 ++SLL GLS Sbjct: 158 LISLLTGLS 166>NP_115964 Length = 524 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VVSLLAG 7 VVSLLAG Sbjct: 430 VVSLLAG 436>NP_001073922 Length = 2190 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SLLAGLS 9 SLLAGLS Sbjct: 2000 SLLAGLS 2006>XP_006725304 Length = 524 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VVSLLAG 7 VVSLLAG Sbjct: 430 VVSLLAG 436>XP_006725303 Length = 524 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VVSLLAG 7 VVSLLAG Sbjct: 430 VVSLLAG 436>XP_005255699 Length = 524 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VVSLLAG 7 VVSLLAG Sbjct: 430 VVSLLAG 436>XP_005255698 Length = 524 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VVSLLAG 7 VVSLLAG Sbjct: 430 VVSLLAG 436>XP_005250173 Length = 1222 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 ++SLL GLS Sbjct: 216 LISLLTGLS 224>NP_003840 Length = 346 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 VVS +AGL+ Sbjct: 282 VVSFIAGLT 290>NP_001005168 Length = 317 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VVSLLAGLS 9 ++SL+AG++ Sbjct: 146 IISLIAGIA 154>NP_001005167 Length = 313 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VVSLLAGLS 9 ++SL+AG++ Sbjct: 142 IISLIAGIA 150>NP_004906 Length = 678 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 VVSL+ GL+ Sbjct: 255 VVSLMKGLA 263>NP_997511 Length = 644 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 VVSL+ GL+ Sbjct: 233 VVSLMKGLA 241>NP_058198 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 VVSL+ GL+ Sbjct: 255 VVSLMKGLA 263>NP_997512 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 VVSL+ GL+ Sbjct: 252 VVSLMKGLA 260>NP_997510 Length = 668 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 VVSL+ GL+ Sbjct: 257 VVSLMKGLA 265>NP_997057 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 VVSL+ GL+ Sbjct: 266 VVSLMKGLA 274>NP_689854 Length = 1835 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 V+SLL+GL Sbjct: 162 VLSLLSGL 169>NP_079357 Length = 1898 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVSLLAGLS 9 ++SL +GLS Sbjct: 1414 IISLTSGLS 1422>XP_006719336 Length = 1779 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 V+SLL+GL Sbjct: 162 VLSLLSGL 169>XP_006719335 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VVSLLAGL 8 V+SLL+GL Sbjct: 162 VLSLLSGL 169Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.136 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 365,321 Number of extensions: 572 Number of successful extensions: 49 Number of sequences better than 10000.0: 49 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 49 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |