Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 18 1482 NP_653080 18 1482 XP_005267292 18 1482 XP_005267291 18 1482 XP_005267290 18 1482 NP_003290 15 9605 NP_056234 15 9605 XP_005274542 15 9605 NP_001019765 15 9605 NP_001131032 15 9605>NP_005091 Length = 1782 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVSEKLTAS 9 V SEKLTAS Sbjct: 345 VASEKLTAS 353>NP_653080 Length = 1684 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVSEKLTAS 9 V SEKLTAS Sbjct: 247 VASEKLTAS 255>XP_005267292 Length = 1677 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVSEKLTAS 9 V SEKLTAS Sbjct: 240 VASEKLTAS 248>XP_005267291 Length = 1684 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVSEKLTAS 9 V SEKLTAS Sbjct: 247 VASEKLTAS 255>XP_005267290 Length = 1782 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVSEKLTAS 9 V SEKLTAS Sbjct: 345 VASEKLTAS 353>NP_003290 Length = 803 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVSEKLTAS 9 VVS++LT S Sbjct: 635 VVSQRLTES 643>NP_056234 Length = 2828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VSEKLTA 8 +SEK+TA Sbjct: 2548 ISEKITA 2554>XP_005274542 Length = 2853 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VSEKLTA 8 +SEK+TA Sbjct: 2573 ISEKITA 2579>NP_001019765 Length = 145 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VSEKLTAS 9 VSE+LTA+ Sbjct: 68 VSEELTAA 75>NP_001131032 Length = 566 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VSEKLTAS 9 VSE+LTA+ Sbjct: 24 VSEELTAA 31Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.106 0.224 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 345,330 Number of extensions: 172 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |