Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_783864 16 5631 XP_005262701 16 5631 NP_944494 16 7355 NP_944493 16 7355 NP_002903 16 7355 NP_689777 16 7355 NP_060360 16 7355 NP_056058 16 7355 NP_004382 16 7355 NP_775853 16 7355 NP_919301 16 7355 XP_006716574 16 7355 XP_006716573 16 7355 XP_005250858 16 7355 XP_005250857 16 7355 XP_005267148 16 7355 XP_005267147 16 7355 XP_006715606 16 7355 NP_004106 16 7355 NP_001273304 15 9605 NP_000878 15 9605 NP_000261 15 9605 NP_073605 15 9605>NP_783864 Length = 1044 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRVFGFKA 9 +RVFG+ A Sbjct: 452 IRVFGYTA 459>XP_005262701 Length = 1035 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRVFGFKA 9 +RVFG+ A Sbjct: 452 IRVFGYTA 459>NP_944494 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVRVFGFKA 9 ++R+F FKA Sbjct: 377 LLRMFSFKA 385>NP_944493 Length = 515 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVRVFGFKA 9 ++R+F FKA Sbjct: 417 LLRMFSFKA 425>NP_002903 Length = 3130 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VVRVFG 6 VVRVFG Sbjct: 37 VVRVFG 42>NP_689777 Length = 3997 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VRVFGFKA 9 +++FGF+A Sbjct: 735 LKIFGFQA 742>NP_060360 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VRVFGFKA 9 +++FGF+A Sbjct: 735 LKIFGFQA 742>NP_056058 Length = 863 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VRVFGFKA 9 +++FGF+A Sbjct: 735 LKIFGFQA 742>NP_004382 Length = 501 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VVRVFGFKA 9 V++VFG+++ Sbjct: 107 VLKVFGYRS 115>NP_775853 Length = 622 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RVFGFK 8 +VFGFK Sbjct: 278 KVFGFK 283>NP_919301 Length = 603 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RVFGFKA 9 R FGFK+ Sbjct: 493 RAFGFKS 499>XP_006716574 Length = 968 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VRVFGFKA 9 +++FGF+A Sbjct: 735 LKIFGFQA 742>XP_006716573 Length = 1776 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VRVFGFKA 9 +++FGF+A Sbjct: 735 LKIFGFQA 742>XP_005250858 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VRVFGFKA 9 +++FGF+A Sbjct: 735 LKIFGFQA 742>XP_005250857 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VRVFGFKA 9 +++FGF+A Sbjct: 735 LKIFGFQA 742>XP_005267148 Length = 2679 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VVRVFG 6 VVRVFG Sbjct: 37 VVRVFG 42>XP_005267147 Length = 2689 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VVRVFG 6 VVRVFG Sbjct: 37 VVRVFG 42>XP_006715606 Length = 3130 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VVRVFG 6 VVRVFG Sbjct: 37 VVRVFG 42>NP_004106 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VRVFGFK 8 VR+FG K Sbjct: 51 VRIFGLK 57>NP_001273304 Length = 1169 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRVFGFKA 9 VRV G KA Sbjct: 703 VRVLGLKA 710>NP_000878 Length = 1163 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRVFGFKA 9 VRV G KA Sbjct: 703 VRVLGLKA 710>NP_000261 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VRVFGF 7 +RVFGF Sbjct: 233 LRVFGF 238>NP_073605 Length = 977 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VVRVFGFK 8 +VR FGF+ Sbjct: 952 IVRGFGFQ 959Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.158 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 390,969 Number of extensions: 349 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |