Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1482 NP_671714 18 1482 XP_006715890 18 1482 XP_005250160 18 1482 XP_005250159 18 1482 XP_006714139 18 1482 NP_775082 16 5631 NP_003377 16 5631 NP_001284 16 5631 NP_001177779 16 5631 NP_001177776 16 5631 NP_037448 16 5631 NP_001008226 16 5631 NP_001177778 16 5631 NP_001177777 16 5631 NP_573568 16 5631 XP_005259549 16 5631 NP_055935 16 7355 NP_006651 16 7355 NP_060522 16 7355 NP_060439 16 7355 XP_005259586 16 7355 XP_005256097 16 7355 XP_006712689 16 7355 XP_005263764 16 7355 NP_036567 16 7355 NP_116221 15 9605 NP_002069 15 9605 NP_001166184 15 9605 XP_006715647 15 9605 XP_006715646 15 9605 XP_005265132 15 9605 XP_005265131 15 9605 XP_006713173 15 9605 XP_005265130 15 9605 XP_005265129 15 9605 XP_005265128 15 9605 XP_005265127 15 9605 XP_005265126 15 9605>NP_005742 Length = 3907 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVRTEDALK 9 VV TEDALK Sbjct: 2467 VVLTEDALK 2475>NP_671714 Length = 3899 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVRTEDALK 9 VV TEDALK Sbjct: 2459 VVLTEDALK 2467>XP_006715890 Length = 3860 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVRTEDALK 9 VV TEDALK Sbjct: 2420 VVLTEDALK 2428>XP_005250160 Length = 3939 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVRTEDALK 9 VV TEDALK Sbjct: 2499 VVLTEDALK 2507>XP_005250159 Length = 3952 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVRTEDALK 9 VV TEDALK Sbjct: 2512 VVLTEDALK 2520>XP_006714139 Length = 950 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVRTEDALK 9 +V TEDALK Sbjct: 939 IVSTEDALK 947>NP_775082 Length = 2721 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VRTEDAL 8 V+TEDAL Sbjct: 2499 VKTEDAL 2505>NP_003377 Length = 2812 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VRTEDAL 8 V+TEDAL Sbjct: 2499 VKTEDAL 2505>NP_001284 Length = 237 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VRTEDALK 9 VRTED+++ Sbjct: 205 VRTEDSIR 212>NP_001177779 Length = 713 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VRTEDALK 9 +R+EDAL+ Sbjct: 164 IRSEDALR 171>NP_001177776 Length = 642 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VRTEDALK 9 +R+EDAL+ Sbjct: 164 IRSEDALR 171>NP_037448 Length = 639 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VRTEDALK 9 +R+EDAL+ Sbjct: 164 IRSEDALR 171>NP_001008226 Length = 572 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VRTEDALK 9 +R+EDAL+ Sbjct: 164 IRSEDALR 171>NP_001177778 Length = 710 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VRTEDALK 9 +R+EDAL+ Sbjct: 164 IRSEDALR 171>NP_001177777 Length = 575 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VRTEDALK 9 +R+EDAL+ Sbjct: 164 IRSEDALR 171>NP_573568 Length = 312 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VVRTEDAL 8 V +TEDAL Sbjct: 115 VTKTEDAL 122>XP_005259549 Length = 1349 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VVRTEDAL 8 V +TEDAL Sbjct: 115 VTKTEDAL 122>NP_055935 Length = 4169 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TEDALK 9 TEDALK Sbjct: 2163 TEDALK 2168>NP_006651 Length = 633 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TEDALK 9 TEDALK Sbjct: 543 TEDALK 548>NP_060522 Length = 782 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VVRTEDALK 9 +++TED+LK Sbjct: 725 LLQTEDSLK 733>NP_060439 Length = 819 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TEDALK 9 TEDALK Sbjct: 174 TEDALK 179>XP_005259586 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VVRTEDAL 8 VVRT+D L Sbjct: 383 VVRTKDVL 390>XP_005256097 Length = 754 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VVRTEDALK 9 +++TED+LK Sbjct: 697 LLQTEDSLK 705>XP_006712689 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TEDALK 9 TEDALK Sbjct: 179 TEDALK 184>XP_005263764 Length = 824 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TEDALK 9 TEDALK Sbjct: 179 TEDALK 184>NP_036567 Length = 582 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VVRTEDAL 8 VVRT+D L Sbjct: 540 VVRTKDVL 547>NP_116221 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VVRTEDAL 8 ++RT+D+L Sbjct: 104 IIRTKDSL 111>NP_002069 Length = 2230 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 747 IQRTEKALK 755>NP_001166184 Length = 2243 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 769 IQRTEKALK 777>XP_006715647 Length = 471 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VVRTEDAL 8 ++RT+D+L Sbjct: 104 IIRTKDSL 111>XP_006715646 Length = 479 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VVRTEDAL 8 ++RT+D+L Sbjct: 104 IIRTKDSL 111>XP_005265132 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 731 IQRTEKALK 739>XP_005265131 Length = 2245 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 769 IQRTEKALK 777>XP_006713173 Length = 2250 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 767 IQRTEKALK 775>XP_005265130 Length = 2252 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 769 IQRTEKALK 777>XP_005265129 Length = 2269 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 786 IQRTEKALK 794>XP_005265128 Length = 2278 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 802 IQRTEKALK 810>XP_005265127 Length = 2283 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 802 IQRTEKALK 810>XP_005265126 Length = 2285 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VVRTEDALK 9 + RTE ALK Sbjct: 802 IQRTEKALK 810Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.129 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 444,204 Number of extensions: 576 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |