Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 18 1482 NP_004561 18 1482 XP_005253450 18 1482 XP_006719151 18 1482 NP_001004757 17 2528 XP_005274043 17 3301 XP_006718611 17 3301 NP_001034841 17 3301 NP_005774 17 4312 NP_001243502 16 5631 NP_000735 16 5631 NP_001258640 16 5631 NP_055395 16 5631 NP_001258641 16 5631 NP_653327 16 5631 NP_001186312 16 5631 NP_001186311 16 5631 NP_001186310 16 5631 NP_001186309 16 5631 XP_005260248 16 5631 XP_005252006 16 5631 XP_006717147 16 5631 XP_005265883 16 5631 YP_003024035 16 5631 NP_001188476 16 7355 NP_004687 16 7355 NP_001188477 16 7355 NP_001188475 16 7355 NP_991111 16 7355 XP_005248511 16 7355 XP_006714627 16 7355 XP_006711096 16 7355 XP_005271374 16 7355 NP_001005160 16 7355 NP_001004752 15 9605>NP_001275701 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V PSLMLLK Sbjct: 201 VEPSLMLLK 209>NP_004561 Length = 1445 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V PSLMLLK Sbjct: 201 VEPSLMLLK 209>XP_005253450 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V PSLMLLK Sbjct: 201 VEPSLMLLK 209>XP_006719151 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V PSLMLLK Sbjct: 201 VEPSLMLLK 209>NP_001004757 Length = 317 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V+PSL LLK Sbjct: 158 VLPSLFLLK 166>XP_005274043 Length = 365 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VVPSLMLL 8 ++PSLMLL Sbjct: 24 ILPSLMLL 31>XP_006718611 Length = 433 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VVPSLMLL 8 ++PSLMLL Sbjct: 24 ILPSLMLL 31>NP_001034841 Length = 541 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VVPSLMLL 8 ++PSLMLL Sbjct: 24 ILPSLMLL 31>NP_005774 Length = 226 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V+P+L LLK Sbjct: 142 VIPTLALLK 150>NP_001243502 Length = 451 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VP L+L+K Sbjct: 175 IVPRLLLMK 183>NP_000735 Length = 627 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VP L+L+K Sbjct: 351 IVPRLLLMK 359>NP_001258640 Length = 411 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VVPSLMLL 8 V PSLMLL Sbjct: 190 VPPSLMLL 197>NP_055395 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VVPSLMLL 8 V PSLMLL Sbjct: 190 VPPSLMLL 197>NP_001258641 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VVPSLMLL 8 V PSLMLL Sbjct: 27 VPPSLMLL 34>NP_653327 Length = 691 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VPSLMLL 8 VPS+MLL Sbjct: 45 VPSIMLL 51>NP_001186312 Length = 663 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VPSLMLL 8 VPS+MLL Sbjct: 17 VPSIMLL 23>NP_001186311 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VPSLMLL 8 VPS+MLL Sbjct: 31 VPSIMLL 37>NP_001186310 Length = 680 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VPSLMLL 8 VPS+MLL Sbjct: 34 VPSIMLL 40>NP_001186309 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VPSLMLL 8 VPS+MLL Sbjct: 47 VPSIMLL 53>XP_005260248 Length = 451 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VP L+L+K Sbjct: 175 IVPRLLLMK 183>XP_005252006 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VVPSLMLL 8 V PSLMLL Sbjct: 27 VPPSLMLL 34>XP_006717147 Length = 437 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VVPSLMLL 8 V PSLMLL Sbjct: 190 VPPSLMLL 197>XP_005265883 Length = 679 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VPSLMLL 8 VPS+MLL Sbjct: 33 VPSIMLL 39>YP_003024035 Length = 459 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VVPSLMLL 8 +VP++MLL Sbjct: 5 IVPTIMLL 12>NP_001188476 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VPS MLL+ Sbjct: 126 LVPSSMLLR 134>NP_004687 Length = 487 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VPS MLL+ Sbjct: 188 LVPSSMLLR 196>NP_001188477 Length = 382 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VPS MLL+ Sbjct: 78 LVPSSMLLR 86>NP_001188475 Length = 439 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VPS MLL+ Sbjct: 140 LVPSSMLLR 148>NP_991111 Length = 276 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V PS+MLL+ Sbjct: 110 VEPSMMLLE 118>XP_005248511 Length = 222 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V PS+MLL+ Sbjct: 56 VEPSMMLLE 64>XP_006714627 Length = 272 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 V PS+MLL+ Sbjct: 106 VEPSMMLLE 114>XP_006711096 Length = 377 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VPS MLL+ Sbjct: 78 LVPSSMLLR 86>XP_005271374 Length = 487 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 +VPS MLL+ Sbjct: 188 LVPSSMLLR 196>NP_001005160 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 ++PSL L+K Sbjct: 158 IIPSLGLIK 166>NP_001004752 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVPSLMLLK 9 ++P L+LLK Sbjct: 158 ILPLLLLLK 166Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.144 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 610,464 Number of extensions: 486 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |