Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 18 1135 XP_006716142 18 1135 XP_005250088 18 1135 XP_006716141 18 1135 XP_005250085 18 1135 XP_006716140 18 1135 XP_005250084 18 1135 XP_005250083 18 1135 XP_005250082 18 1135 NP_848695 18 1482 NP_848696 18 1482 NP_110416 18 1482 XP_005260619 18 1482 NP_001245219 17 3301 NP_775773 17 3301 NP_001245220 17 3301 XP_006714616 17 3301 NP_443142 17 4312 NP_001268432 17 4312 NP_001136269 16 5631 NP_001299 16 5631 NP_001276932 16 7355 NP_079229 16 7355 NP_001130008 16 7355 NP_001136438 16 7355 NP_001164171 16 7355 XP_006722611 16 7355 XP_006722610 16 7355 XP_005253995 16 7355 XP_006719669 16 7355 XP_006714077 16 7355 XP_005247794 16 7355 XP_006713802 16 7355 XP_006713801 16 7355 NP_899231 16 7355 NP_002832 15 9605 NP_005493 15 9605 NP_001271254 15 9605 NP_001181 15 9605 NP_001158245 15 9605 NP_001171500 15 9605 NP_001910 15 9605 NP_113666 15 9605 NP_065692 15 9605 NP_001155057 15 9605 XP_005251837 15 9605 XP_005251835 15 9605 XP_006717058 15 9605 XP_005251833 15 9605 XP_005251831 15 9605 XP_005251830 15 9605 XP_005265410 15 9605 XP_005265409 15 9605 NP_001088 15 9605>NP_733751 Length = 4911 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 919 VVLPGVSTA 927>XP_006716142 Length = 4927 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 920 VVLPGVSTA 928>XP_005250088 Length = 4928 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 920 VVLPGVSTA 928>XP_006716141 Length = 4959 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 920 VVLPGVSTA 928>XP_005250085 Length = 4979 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 920 VVLPGVSTA 928>XP_006716140 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 920 VVLPGVSTA 928>XP_005250084 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 920 VVLPGVSTA 928>XP_005250083 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 919 VVLPGVSTA 927>XP_005250082 Length = 4983 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VVLPGV TA Sbjct: 920 VVLPGVSTA 928>NP_848695 Length = 394 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VV+PG+F A Sbjct: 266 VVIPGIFIA 274>NP_848696 Length = 426 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VV+PG+F A Sbjct: 266 VVIPGIFIA 274>NP_110416 Length = 377 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VV+PG+F A Sbjct: 266 VVIPGIFIA 274>XP_005260619 Length = 317 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 VV+PG+F A Sbjct: 266 VVIPGIFIA 274>NP_001245219 Length = 850 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PGVFTA Sbjct: 273 PGVFTA 278>NP_775773 Length = 855 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PGVFTA Sbjct: 273 PGVFTA 278>NP_001245220 Length = 752 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PGVFTA Sbjct: 273 PGVFTA 278>XP_006714616 Length = 399 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VVLPGVF 7 V++PGVF Sbjct: 364 VIIPGVF 370>NP_443142 Length = 696 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VVLPGVFTA 9 ++LPG F A Sbjct: 461 LILPGTFNA 469>NP_001268432 Length = 696 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VVLPGVFTA 9 ++LPG F A Sbjct: 461 LILPGTFNA 469>NP_001136269 Length = 415 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LPGVFTA 9 LPG++TA Sbjct: 36 LPGLYTA 42>NP_001299 Length = 458 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VVLPGVFT 8 ++LPG++T Sbjct: 379 LLLPGIYT 386>NP_001276932 Length = 493 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 LPGVFTA 9 LPG FT+ Sbjct: 32 LPGAFTS 38>NP_079229 Length = 972 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 +++P VFT+ Sbjct: 881 IIMPPVFTS 889>NP_001130008 Length = 616 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PGVFT+ Sbjct: 164 PGVFTS 169>NP_001136438 Length = 1923 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VVLPGVF 7 +VLPG+F Sbjct: 1567 LVLPGMF 1573>NP_001164171 Length = 781 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PGVFT+ Sbjct: 329 PGVFTS 334>XP_006722611 Length = 1034 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VVLPGVF 7 +VLPG+F Sbjct: 678 LVLPGMF 684>XP_006722610 Length = 1967 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VVLPGVF 7 +VLPG+F Sbjct: 1611 LVLPGMF 1617>XP_005253995 Length = 836 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 +++P VFT+ Sbjct: 745 IIMPPVFTS 753>XP_006719669 Length = 944 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VVLPGVFTA 9 +++P VFT+ Sbjct: 853 IIMPPVFTS 861>XP_006714077 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PGVFT+ Sbjct: 454 PGVFTS 459>XP_005247794 Length = 518 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 LPGVFTA 9 LPG FT+ Sbjct: 57 LPGAFTS 63>XP_006713802 Length = 520 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 LPGVFTA 9 LPG FT+ Sbjct: 59 LPGAFTS 65>XP_006713801 Length = 520 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 LPGVFTA 9 LPG FT+ Sbjct: 59 LPGAFTS 65>NP_899231 Length = 328 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LPGVFT 8 LPGV+T Sbjct: 248 LPGVYT 253>NP_002832 Length = 1445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 PGVFT 8 PGVFT Sbjct: 1391 PGVFT 1395>NP_005493 Length = 2261 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VVLPGVF 7 +VLP VF Sbjct: 1351 IVLPAVF 1357>NP_001271254 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VVLPGV 6 V+LPGV Sbjct: 251 VILPGV 256>NP_001181 Length = 392 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VVLPGV 6 V+LPGV Sbjct: 291 VILPGV 296>NP_001158245 Length = 300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VVLPGV 6 V+LPGV Sbjct: 199 VILPGV 204>NP_001171500 Length = 285 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PGVF+A Sbjct: 101 PGVFSA 106>NP_001910 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PGVF+A Sbjct: 101 PGVFSA 106>NP_113666 Length = 274 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VVLPGVF 7 VV PG+F Sbjct: 10 VVFPGLF 16>NP_065692 Length = 294 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 VVLPGVFT 8 + +PGVF+ Sbjct: 7 IFIPGVFS 14>NP_001155057 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 VVLPGVFT 8 + +PGVF+ Sbjct: 7 IFIPGVFS 14>XP_005251837 Length = 1659 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VVLPGVF 7 +VLP VF Sbjct: 1353 IVLPAVF 1359>XP_005251835 Length = 2074 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VVLPGVF 7 +VLP VF Sbjct: 1353 IVLPAVF 1359>XP_006717058 Length = 2100 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VVLPGVF 7 +VLP VF Sbjct: 1353 IVLPAVF 1359>XP_005251833 Length = 2203 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VVLPGVF 7 +VLP VF Sbjct: 1293 IVLPAVF 1299>XP_005251831 Length = 2263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VVLPGVF 7 +VLP VF Sbjct: 1353 IVLPAVF 1359>XP_005251830 Length = 2263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VVLPGVF 7 +VLP VF Sbjct: 1353 IVLPAVF 1359>XP_005265410 Length = 1416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 PGVFT 8 PGVFT Sbjct: 1362 PGVFT 1366>XP_005265409 Length = 1431 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 PGVFT 8 PGVFT Sbjct: 1377 PGVFT 1381>NP_001088 Length = 421 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 PGVFTA 9 PG++TA Sbjct: 272 PGIYTA 277Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.149 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 755,031 Number of extensions: 1048 Number of successful extensions: 54 Number of sequences better than 10000.0: 54 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 54 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |