Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001185761 19 869 NP_001185763 19 869 NP_055459 19 869 XP_006726410 19 869 XP_006711719 19 869 XP_006711718 19 869 XP_006711717 19 869 XP_006711716 19 869 XP_006711715 19 869 XP_006711714 19 869 XP_006711713 19 869 XP_006711711 19 869 XP_006711710 19 869 XP_006711709 19 869 XP_005277503 19 869 XP_005273038 19 869 XP_005277500 19 869 XP_006711707 19 869 XP_005277499 19 869 XP_006711706 19 869 XP_006711705 19 869 XP_006711164 19 869 XP_005276153 19 869 XP_003846805 19 869 XP_006726412 17 2528 XP_006711760 17 2528 NP_653272 17 3301 NP_001171468 17 3301 NP_001171467 17 3301 XP_006719320 17 3301 NP_061978 17 4312 NP_078886 16 5631 XP_005247818 16 5631 NP_056046 16 7355 NP_116045 16 7355 XP_005253647 16 7355 XP_006718233 16 7355 NP_001013657 15 9605 NP_955373 15 9605 NP_787055 15 9605 NP_062831 15 9605 NP_001137474 15 9605 XP_006724566 15 9605 XP_005274619 15 9605 XP_006723268 15 9605 XP_005259506 15 9605 XP_006723267 15 9605>NP_001185761 Length = 2240 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 1942 VAEVRALRG 1950>NP_001185763 Length = 2362 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2048 VAEVRALRG 2056>NP_055459 Length = 2346 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2048 VAEVRALRG 2056>XP_006726410 Length = 2087 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 1789 VAEVRALRG 1797>XP_006711719 Length = 2302 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2004 VAEVRALRG 2012>XP_006711718 Length = 1436 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 1055 VAEVRALRG 1063>XP_006711717 Length = 2385 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2004 VAEVRALRG 2012>XP_006711716 Length = 2411 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2113 VAEVRALRG 2121>XP_006711715 Length = 2428 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2047 VAEVRALRG 2055>XP_006711714 Length = 2429 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2048 VAEVRALRG 2056>XP_006711713 Length = 2432 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2051 VAEVRALRG 2059>XP_006711711 Length = 2482 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2101 VAEVRALRG 2109>XP_006711710 Length = 2494 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2113 VAEVRALRG 2121>XP_006711709 Length = 2495 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2114 VAEVRALRG 2122>XP_005277503 Length = 2498 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2211 VAEVRALRG 2219>XP_005273038 Length = 2509 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2211 VAEVRALRG 2219>XP_005277500 Length = 2525 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2211 VAEVRALRG 2219>XP_006711707 Length = 2553 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2211 VAEVRALRG 2219>XP_005277499 Length = 2561 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2211 VAEVRALRG 2219>XP_006711706 Length = 2591 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2210 VAEVRALRG 2218>XP_006711705 Length = 2592 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 2211 VAEVRALRG 2219>XP_006711164 Length = 2087 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 1789 VAEVRALRG 1797>XP_005276153 Length = 267 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 44 VAEVRALRG 52>XP_003846805 Length = 306 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 V EVRALRG Sbjct: 44 VAEVRALRG 52>XP_006726412 Length = 140 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VVEVRALRG 9 V EVR LRG Sbjct: 120 VAEVRGLRG 128>XP_006711760 Length = 140 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VVEVRALRG 9 V EVR LRG Sbjct: 120 VAEVRGLRG 128>NP_653272 Length = 249 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EVRALRG 9 E+RALRG Sbjct: 234 EIRALRG 240>NP_001171468 Length = 249 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EVRALRG 9 E+RALRG Sbjct: 234 EIRALRG 240>NP_001171467 Length = 262 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EVRALRG 9 E+RALRG Sbjct: 247 EIRALRG 253>XP_006719320 Length = 249 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EVRALRG 9 E+RALRG Sbjct: 234 EIRALRG 240>NP_061978 Length = 4242 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VEVRALRG 9 V VRALRG Sbjct: 818 VTVRALRG 825>NP_078886 Length = 488 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VVEVRALR 8 VVE++ALR Sbjct: 341 VVEIQALR 348>XP_005247818 Length = 460 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VVEVRALR 8 VVE++ALR Sbjct: 313 VVEIQALR 320>NP_056046 Length = 1436 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 EVRALRG 9 EVR LRG Sbjct: 1111 EVRTLRG 1117>NP_116045 Length = 1157 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 ++E+R LRG Sbjct: 885 MMEIRRLRG 893>XP_005253647 Length = 1175 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVEVRALRG 9 ++E+R LRG Sbjct: 885 MMEIRRLRG 893>XP_006718233 Length = 782 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 EVRALRG 9 EVR LRG Sbjct: 457 EVRTLRG 463>NP_001013657 Length = 194 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 EVRALRG 9 +VRA+RG Sbjct: 57 DVRAMRG 63>NP_955373 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VEVRALRG 9 +EVR LRG Sbjct: 658 LEVRNLRG 665>NP_787055 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VRALRG 9 VRALRG Sbjct: 201 VRALRG 206>NP_062831 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VRALRG 9 VRALRG Sbjct: 201 VRALRG 206>NP_001137474 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VRALRG 9 VRALRG Sbjct: 201 VRALRG 206>XP_006724566 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VRALRG 9 VRALRG Sbjct: 201 VRALRG 206>XP_005274619 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VRALRG 9 VRALRG Sbjct: 201 VRALRG 206>XP_006723268 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VEVRALRG 9 +EVR LRG Sbjct: 658 LEVRNLRG 665>XP_005259506 Length = 933 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VEVRALRG 9 +EVR LRG Sbjct: 671 LEVRNLRG 678>XP_006723267 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VEVRALRG 9 +EVR LRG Sbjct: 685 LEVRNLRG 692Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.146 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 275,843 Number of extensions: 388 Number of successful extensions: 47 Number of sequences better than 10000.0: 47 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 47 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |