Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 20 509 XP_006716142 20 509 XP_005250088 20 509 XP_006716141 20 509 XP_005250085 20 509 XP_006716140 20 509 XP_005250084 20 509 XP_005250083 20 509 XP_005250082 20 509 NP_058627 17 4312 NP_001137309 17 4312 NP_001137308 17 4312 NP_001269516 17 4312 NP_004276 17 4312 XP_006711115 17 4312 XP_005263598 17 4312 XP_005263597 17 4312 XP_005263596 17 4312 NP_001153174 16 7355 NP_775871 16 7355 XP_006724809 16 7355 XP_006724808 16 7355 XP_006724807 16 7355 XP_006724806 16 7355 XP_006718916 16 7355 XP_006718915 16 7355 XP_006718914 16 7355 XP_006718913 16 7355 XP_006718912 16 7355 XP_006718911 16 7355 XP_006718910 16 7355 NP_758424 15 9605 NP_061142 15 9605 NP_065071 15 9605 NP_689763 15 9605 XP_006717988 15 9605 XP_006717987 15 9605 XP_006717986 15 9605 XP_005270044 15 9605 XP_005270045 15 9605 XP_006714821 15 9605 XP_006714820 15 9605 XP_005268437 15 9605>NP_733751 Length = 4911 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2973 VTVVSRVNH 2981>XP_006716142 Length = 4927 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2990 VTVVSRVNH 2998>XP_005250088 Length = 4928 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2990 VTVVSRVNH 2998>XP_006716141 Length = 4959 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2990 VTVVSRVNH 2998>XP_005250085 Length = 4979 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2990 VTVVSRVNH 2998>XP_006716140 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2990 VTVVSRVNH 2998>XP_005250084 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2990 VTVVSRVNH 2998>XP_005250083 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2989 VTVVSRVNH 2997>XP_005250082 Length = 4983 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VTVVSRVSH 9 VTVVSRV+H Sbjct: 2990 VTVVSRVNH 2998>NP_058627 Length = 578 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 309 VTIISVISH 317>NP_001137309 Length = 554 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 285 VTIISVISH 293>NP_001137308 Length = 538 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 309 VTIISVISH 317>NP_001269516 Length = 802 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVVSRVSH 9 T+VSRV H Sbjct: 767 TLVSRVGH 774>NP_004276 Length = 791 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVVSRVSH 9 T+VSRV H Sbjct: 756 TLVSRVGH 763>XP_006711115 Length = 791 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVVSRVSH 9 T+VSRV H Sbjct: 756 TLVSRVGH 763>XP_005263598 Length = 798 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVVSRVSH 9 T+VSRV H Sbjct: 763 TLVSRVGH 770>XP_005263597 Length = 800 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVVSRVSH 9 T+VSRV H Sbjct: 765 TLVSRVGH 772>XP_005263596 Length = 802 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVVSRVSH 9 T+VSRV H Sbjct: 767 TLVSRVGH 774>NP_001153174 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VSRVSH 9 VSRVSH Sbjct: 234 VSRVSH 239>NP_775871 Length = 8384 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 TVVSRVSH 9 T +SR SH Sbjct: 6864 TAISRTSH 6871>XP_006724809 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VSRVSH 9 VSRVSH Sbjct: 234 VSRVSH 239>XP_006724808 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VSRVSH 9 VSRVSH Sbjct: 234 VSRVSH 239>XP_006724807 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VSRVSH 9 VSRVSH Sbjct: 234 VSRVSH 239>XP_006724806 Length = 339 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VSRVSH 9 VSRVSH Sbjct: 250 VSRVSH 255>XP_006718916 Length = 420 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 330 VTIISVMSH 338>XP_006718915 Length = 446 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 330 VTIISVMSH 338>XP_006718914 Length = 514 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 285 VTIISVMSH 293>XP_006718913 Length = 553 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 284 VTIISVMSH 292>XP_006718912 Length = 559 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 330 VTIISVMSH 338>XP_006718911 Length = 578 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 330 VTIISVMSH 338>XP_006718910 Length = 599 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTVVSRVSH 9 VT++S +SH Sbjct: 330 VTIISVMSH 338>NP_758424 Length = 1642 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VVSRVSH 9 V+SR++H Sbjct: 1412 VISRITH 1418>NP_061142 Length = 1642 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VVSRVSH 9 V+SR++H Sbjct: 1412 VISRITH 1418>NP_065071 Length = 1067 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VTVVSRVS 8 +TVVSRV+ Sbjct: 57 LTVVSRVA 64>NP_689763 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VTVVSRV 7 +TV+SRV Sbjct: 220 ITVISRV 226>XP_006717988 Length = 986 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VTVVSRVS 8 +TVVSRV+ Sbjct: 57 LTVVSRVA 64>XP_006717987 Length = 1073 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VTVVSRVS 8 +TVVSRV+ Sbjct: 57 LTVVSRVA 64>XP_006717986 Length = 1073 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VTVVSRVS 8 +TVVSRV+ Sbjct: 57 LTVVSRVA 64>XP_005270044 Length = 1073 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VTVVSRVS 8 +TVVSRV+ Sbjct: 57 LTVVSRVA 64>XP_005270045 Length = 1073 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VTVVSRVS 8 +TVVSRV+ Sbjct: 57 LTVVSRVA 64>XP_006714821 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VTVVSRV 7 +TV+SRV Sbjct: 220 ITVISRV 226>XP_006714820 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VTVVSRV 7 +TV+SRV Sbjct: 220 ITVISRV 226>XP_005268437 Length = 735 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VTVVSRV 7 +TV+SRV Sbjct: 220 ITVISRV 226Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.122 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 266,646 Number of extensions: 441 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |