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Blast-Search of mutated query peptide against human proteome

BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_005742                                                              18    1935
NP_671714                                                              18    1935
XP_006715890                                                           18    1935
XP_005250160                                                           18    1935
XP_005250159                                                           18    1935
NP_078966                                                              16    7355
NP_001184060                                                           16    7355
NP_115287                                                              16    7355
NP_002472                                                              16    7355
NP_115286                                                              16    7355
XP_005245262                                                           16    7355
XP_005245259                                                           16    7355
XP_006711402                                                           16    7355
XP_005245258                                                           16    7355
XP_005245257                                                           16    7355
XP_005245256                                                           16    7355

>NP_005742
          Length = 3907

 Score = 17.7 bits (34), Expect =  1935
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    VTMTSRVAE 9
            VTMTSR AE
Sbjct: 1024 VTMTSRGAE 1032



>NP_671714
          Length = 3899

 Score = 17.7 bits (34), Expect =  1935
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    VTMTSRVAE 9
            VTMTSR AE
Sbjct: 1024 VTMTSRGAE 1032



>XP_006715890
          Length = 3860

 Score = 17.7 bits (34), Expect =  1935
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    VTMTSRVAE 9
            VTMTSR AE
Sbjct: 1024 VTMTSRGAE 1032



>XP_005250160
          Length = 3939

 Score = 17.7 bits (34), Expect =  1935
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    VTMTSRVAE 9
            VTMTSR AE
Sbjct: 1024 VTMTSRGAE 1032



>XP_005250159
          Length = 3952

 Score = 17.7 bits (34), Expect =  1935
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    VTMTSRVAE 9
            VTMTSR AE
Sbjct: 1024 VTMTSRGAE 1032



>NP_078966
          Length = 14507

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2    TMTSRVAE 9
            T+TSRV E
Sbjct: 6488 TLTSRVPE 6495



>NP_001184060
          Length = 186

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  TMTSRVAE 9
          T+TSRV E
Sbjct: 73 TLTSRVEE 80



>NP_115287
          Length = 224

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 95  TLTSRVEE 102



>NP_002472
          Length = 982

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 869 TLTSRVEE 876



>NP_115286
          Length = 208

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 95  TLTSRVEE 102



>XP_005245262
          Length = 891

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 762 TLTSRVEE 769



>XP_005245259
          Length = 998

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 869 TLTSRVEE 876



>XP_006711402
          Length = 1042

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 930 TLTSRVEE 937



>XP_005245258
          Length = 1043

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 930 TLTSRVEE 937



>XP_005245257
          Length = 1058

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 930 TLTSRVEE 937



>XP_005245256
          Length = 1059

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   TMTSRVAE 9
           T+TSRV E
Sbjct: 930 TLTSRVEE 937



  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.311    0.110    0.251 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 206,573
Number of extensions: 167
Number of successful extensions: 16
Number of sequences better than 10000.0: 16
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)