Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004351 18 1935 XP_005251865 18 1935 XP_005251864 18 1935 NP_055745 18 1935 NP_001155048 17 2528 NP_056404 17 2528 NP_443171 17 4312 NP_001191195 17 4312 NP_001191196 17 4312 NP_000800 17 4312 NP_001123465 17 4312 XP_006714066 17 4312 XP_005264664 17 4312 XP_005264663 17 4312 XP_005264662 17 4312 XP_006711210 17 4312 XP_006711209 17 4312 XP_005244929 17 4312 XP_006711208 17 4312 NP_115895 17 4312 NP_001258625 16 5631 NP_001258627 16 5631 NP_004290 16 5631 NP_001258628 16 5631 NP_000799 16 5631 NP_777596 16 5631 NP_001258626 16 5631 XP_005274716 16 5631 NP_112092 16 7355 NP_031377 16 7355 NP_663612 16 7355 NP_005631 16 7355 XP_006724281 16 7355 XP_006724280 16 7355 XP_005258397 16 7355 XP_005258396 16 7355 XP_006722591 16 7355 XP_005262913 16 7355 NP_000213 15 9605 NP_001087241 15 9605 NP_001273659 15 9605 NP_201567 15 9605 NP_536856 15 9605 NP_612191 15 9605 NP_612190 15 9605 NP_113648 15 9605 NP_066984 15 9605 NP_001128583 15 9605 XP_005251914 15 9605 XP_006717092 15 9605 XP_006717091 15 9605 XP_005251912 15 9605 XP_006717090 15 9605 XP_006715302 15 9605 XP_005265799 15 9605 XP_005265798 15 9605 XP_005265797 15 9605>NP_004351 Length = 882 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VTLNTVG 7 VTLNTVG Sbjct: 114 VTLNTVG 120>XP_005251865 Length = 682 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VTLNTVG 7 VTLNTVG Sbjct: 12 VTLNTVG 18>XP_005251864 Length = 683 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VTLNTVG 7 VTLNTVG Sbjct: 12 VTLNTVG 18>NP_055745 Length = 683 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VTLNTVG 7 VTLNTVG Sbjct: 12 VTLNTVG 18>NP_001155048 Length = 630 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TLNTVGTT 9 T+NT+GT+ Sbjct: 228 TINTIGTS 235>NP_056404 Length = 718 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TLNTVGTT 9 T+NT+GT+ Sbjct: 228 TINTIGTS 235>NP_443171 Length = 734 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 VTLN GT+ Sbjct: 558 VTLNVTGTS 566>NP_001191195 Length = 535 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLNTVGTT 9 T+NT+G T Sbjct: 470 TVNTIGAT 477>NP_001191196 Length = 484 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLNTVGTT 9 T+NT+G T Sbjct: 419 TVNTIGAT 426>NP_000800 Length = 554 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLNTVGTT 9 T+NT+G T Sbjct: 489 TVNTIGAT 496>NP_001123465 Length = 718 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLNTVGT 8 +LNTVGT Sbjct: 429 SLNTVGT 435>XP_006714066 Length = 544 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLNTVGTT 9 T+NT+G T Sbjct: 479 TVNTIGAT 486>XP_005264664 Length = 572 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLNTVGT 8 +LNTVGT Sbjct: 283 SLNTVGT 289>XP_005264663 Length = 707 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLNTVGT 8 +LNTVGT Sbjct: 429 SLNTVGT 435>XP_005264662 Length = 710 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLNTVGT 8 +LNTVGT Sbjct: 429 SLNTVGT 435>XP_006711210 Length = 485 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 VTLN GT+ Sbjct: 309 VTLNVTGTS 317>XP_006711209 Length = 613 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 VTLN GT+ Sbjct: 558 VTLNVTGTS 566>XP_005244929 Length = 647 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 VTLN GT+ Sbjct: 471 VTLNVTGTS 479>XP_006711208 Length = 734 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 VTLN GT+ Sbjct: 558 VTLNVTGTS 566>NP_115895 Length = 707 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLNTVGT 8 +LNTVGT Sbjct: 429 SLNTVGT 435>NP_001258625 Length = 752 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VTLNTVGT 8 VTL T+GT Sbjct: 296 VTLGTLGT 303>NP_001258627 Length = 726 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VTLNTVGT 8 VTL T+GT Sbjct: 270 VTLGTLGT 277>NP_004290 Length = 753 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VTLNTVGT 8 VTL T+GT Sbjct: 297 VTLGTLGT 304>NP_001258628 Length = 713 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VTLNTVGT 8 VTL T+GT Sbjct: 257 VTLGTLGT 264>NP_000799 Length = 492 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TLNTVGTT 9 T N VGTT Sbjct: 395 TFNIVGTT 402>NP_777596 Length = 692 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VTLNTVGT 8 VTL T+GT Sbjct: 346 VTLGTLGT 353>NP_001258626 Length = 712 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VTLNTVGT 8 VTL T+GT Sbjct: 256 VTLGTLGT 263>XP_005274716 Length = 491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TLNTVGTT 9 T N VGTT Sbjct: 394 TFNIVGTT 401>NP_112092 Length = 337 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 V N+VGTT Sbjct: 118 VVSNSVGTT 126>NP_031377 Length = 1228 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TLNTVGTT 9 +LNTVG T Sbjct: 155 SLNTVGGT 162>NP_663612 Length = 337 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 V N+VGTT Sbjct: 118 VVSNSVGTT 126>NP_005631 Length = 862 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 VTL++VG T Sbjct: 410 VTLHSVGPT 418>XP_006724281 Length = 337 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 V N+VGTT Sbjct: 118 VVSNSVGTT 126>XP_006724280 Length = 415 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTLNTVGTT 9 V N+VGTT Sbjct: 196 VVSNSVGTT 204>XP_005258397 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 VTL++VG T Sbjct: 410 VTLHSVGPT 418>XP_005258396 Length = 625 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 VTL++VG T Sbjct: 410 VTLHSVGPT 418>XP_006722591 Length = 827 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 VTL++VG T Sbjct: 410 VTLHSVGPT 418>XP_005262913 Length = 1193 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TLNTVGTT 9 +LNTVG T Sbjct: 155 SLNTVGGT 162>NP_000213 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 V +N+VG+T Sbjct: 955 VRINSVGST 963>NP_001087241 Length = 972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 V +N+VG+T Sbjct: 951 VRINSVGST 959>NP_001273659 Length = 652 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLNTVG 7 T+NTVG Sbjct: 531 TINTVG 536>NP_201567 Length = 393 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VTLNTVG 7 VTL TVG Sbjct: 208 VTLTTVG 214>NP_536856 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLNTVG 7 T+NTVG Sbjct: 531 TINTVG 536>NP_612191 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VTLNTVG 7 VTL TVG Sbjct: 277 VTLTTVG 283>NP_612190 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VTLNTVG 7 VTL TVG Sbjct: 277 VTLTTVG 283>NP_113648 Length = 332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VTLNTVG 7 +TL+TVG Sbjct: 217 ITLSTVG 223>NP_066984 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VTLNTVG 7 VTL TVG Sbjct: 272 VTLTTVG 278>NP_001128583 Length = 271 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VTLNTVG 7 +TL+TVG Sbjct: 217 ITLSTVG 223>XP_005251914 Length = 624 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLNTVG 7 T+NTVG Sbjct: 498 TINTVG 503>XP_006717092 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLNTVG 7 T+NTVG Sbjct: 549 TINTVG 554>XP_006717091 Length = 675 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLNTVG 7 T+NTVG Sbjct: 549 TINTVG 554>XP_005251912 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLNTVG 7 T+NTVG Sbjct: 531 TINTVG 536>XP_006717090 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLNTVG 7 T+NTVG Sbjct: 549 TINTVG 554>XP_006715302 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VTLNTVG 7 +TL+TVG Sbjct: 217 ITLSTVG 223>XP_005265799 Length = 973 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 V +N+VG+T Sbjct: 952 VRINSVGST 960>XP_005265798 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 V +N+VG+T Sbjct: 955 VRINSVGST 963>XP_005265797 Length = 977 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VTLNTVGTT 9 V +N+VG+T Sbjct: 956 VRINSVGST 964Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.120 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 384,361 Number of extensions: 746 Number of successful extensions: 57 Number of sequences better than 10000.0: 57 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 57 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |