Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245200 19 869 NP_000240 19 869 NP_001161089 19 869 XP_005265218 19 869 NP_006419 18 1935 XP_005255098 18 1935 XP_005255097 18 1935 NP_002205 17 3301 NP_056083 17 3301 XP_005249809 17 3301 XP_005249808 17 3301 XP_005247302 17 3301 NP_001257292 16 5631 NP_001257291 16 5631 NP_005044 16 5631 NP_036519 16 5631 NP_055026 16 7355 NP_068838 16 7355 XP_005262246 16 7355 XP_005262245 16 7355 XP_005262244 16 7355 XP_006724750 16 7355 XP_005262243 16 7355 XP_005249007 16 7355 XP_005265929 16 7355 NP_001012458 16 7355 NP_001234916 15 9605 NP_065877 15 9605 XP_006722374 15 9605 XP_006722373 15 9605 XP_006722370 15 9605 XP_006722365 15 9605 XP_006718330 15 9605>NP_001245200 Length = 687 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 VTIT KTAD Sbjct: 113 VTITTKTAD 121>NP_000240 Length = 756 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 VTIT KTAD Sbjct: 113 VTITTKTAD 121>NP_001161089 Length = 658 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 VTIT KTAD Sbjct: 15 VTITTKTAD 23>XP_005265218 Length = 687 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 VTIT KTAD Sbjct: 113 VTITTKTAD 121>NP_006419 Length = 256 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 VT+TM+T D Sbjct: 125 VTVTMRTLD 133>XP_005255098 Length = 256 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 VT+TM+T D Sbjct: 125 VTVTMRTLD 133>XP_005255097 Length = 287 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 VT+TM+T D Sbjct: 156 VTVTMRTLD 164>NP_002205 Length = 769 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTITMKTAD 9 VT+TMK D Sbjct: 432 VTVTMKKCD 440>NP_056083 Length = 2243 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TITMKTAD 9 TITM+T+D Sbjct: 1401 TITMETSD 1408>XP_005249809 Length = 634 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTITMKTAD 9 VT+TMK D Sbjct: 297 VTVTMKKCD 305>XP_005249808 Length = 634 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VTITMKTAD 9 VT+TMK D Sbjct: 297 VTVTMKKCD 305>XP_005247302 Length = 2248 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TITMKTAD 9 TITM+T+D Sbjct: 1406 TITMETSD 1413>NP_001257292 Length = 308 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VTITMKT 7 VTIT+KT Sbjct: 3 VTITLKT 9>NP_001257291 Length = 362 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VTITMKT 7 VTIT+KT Sbjct: 3 VTITLKT 9>NP_005044 Length = 363 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VTITMKT 7 VTIT+KT Sbjct: 3 VTITLKT 9>NP_036519 Length = 663 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VTITMKTA 8 VT+TMK A Sbjct: 76 VTLTMKVA 83>NP_055026 Length = 440 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ITMKTAD 9 +TMKT+D Sbjct: 383 LTMKTSD 389>NP_068838 Length = 761 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TITMKTAD 9 T+T+KT D Sbjct: 183 TVTIKTED 190>XP_005262246 Length = 761 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TITMKTAD 9 T+T+KT D Sbjct: 183 TVTIKTED 190>XP_005262245 Length = 807 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TITMKTAD 9 T+T+KT D Sbjct: 183 TVTIKTED 190>XP_005262244 Length = 807 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TITMKTAD 9 T+T+KT D Sbjct: 183 TVTIKTED 190>XP_006724750 Length = 807 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TITMKTAD 9 T+T+KT D Sbjct: 183 TVTIKTED 190>XP_005262243 Length = 807 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TITMKTAD 9 T+T+KT D Sbjct: 183 TVTIKTED 190>XP_005249007 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VTITMKTAD 9 +T+T++TA+ Sbjct: 3 ITLTLQTAE 11>XP_005265929 Length = 361 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ITMKTAD 9 +TMKT+D Sbjct: 304 LTMKTSD 310>NP_001012458 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VTITMKTAD 9 +T+T++TA+ Sbjct: 3 ITLTLQTAE 11>NP_001234916 Length = 282 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 +T+T++T D Sbjct: 95 LTLTLRTCD 103>NP_065877 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 +T+T++T D Sbjct: 239 LTLTLRTCD 247>XP_006722374 Length = 944 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VTITMKTAD 9 VT++ KT D Sbjct: 710 VTVSSKTGD 718>XP_006722373 Length = 948 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VTITMKTAD 9 VT++ KT D Sbjct: 714 VTVSSKTGD 722>XP_006722370 Length = 956 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VTITMKTAD 9 VT++ KT D Sbjct: 722 VTVSSKTGD 730>XP_006722365 Length = 981 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VTITMKTAD 9 VT++ KT D Sbjct: 747 VTVSSKTGD 755>XP_006718330 Length = 282 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VTITMKTAD 9 +T+T++T D Sbjct: 95 LTLTLRTCD 103Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.118 0.290 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 302,047 Number of extensions: 501 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |