Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_722576                                                              19     665
XP_005262424                                                           19     665
NP_001035877                                                           16    7355
NP_001035814                                                           16    7355
NP_056062                                                              16    7355
NP_079245                                                              16    7355
NP_001165644                                                           16    7355
XP_005259931                                                           16    7355
XP_005259930                                                           16    7355
XP_006721215                                                           16    7355
XP_006721214                                                           16    7355
XP_006721213                                                           16    7355
XP_006721212                                                           16    7355
XP_005255869                                                           16    7355
XP_006721211                                                           16    7355
XP_005254426                                                           16    7355
XP_006719811                                                           16    7355
XP_005266249                                                           16    7355
XP_005246922                                                           16    7355
XP_006710028                                                           16    7355
XP_005275786                                                           16    7355
NP_001034703                                                           16    7355
NP_004534                                                              15    9605
NP_001258137                                                           15    9605
NP_001157980                                                           15    9605
NP_001157979                                                           15    9605
NP_006807                                                              15    9605
NP_057490                                                              15    9605
XP_005246675                                                           15    9605
XP_005246674                                                           15    9605
XP_005246672                                                           15    9605
XP_005246670                                                           15    9605
XP_005246669                                                           15    9605
XP_005246668                                                           15    9605
XP_005246667                                                           15    9605
XP_005246665                                                           15    9605
XP_006712605                                                           15    9605
XP_006712604                                                           15    9605
XP_005246663                                                           15    9605
XP_005246660                                                           15    9605
XP_005246661                                                           15    9605
XP_005246659                                                           15    9605
XP_005246658                                                           15    9605
XP_005246657                                                           15    9605
XP_005246656                                                           15    9605
XP_005246655                                                           15    9605
XP_005246654                                                           15    9605
XP_005246653                                                           15    9605
XP_005246652                                                           15    9605
XP_005246649                                                           15    9605
XP_005246651                                                           15    9605
XP_005246650                                                           15    9605
XP_005246648                                                           15    9605
XP_005246647                                                           15    9605
XP_005245311                                                           15    9605
>NP_722576
          Length = 3080

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VTDESTQRV 9
           VTDES QRV
Sbjct: 870 VTDESAQRV 878
>XP_005262424
          Length = 2875

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VTDESTQRV 9
           VTDES QRV
Sbjct: 665 VTDESAQRV 673
>NP_001035877
          Length = 953

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>NP_001035814
          Length = 953

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>NP_056062
          Length = 956

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>NP_079245
          Length = 585

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 1   VTDESTQ 7
           VTD STQ
Sbjct: 356 VTDSSTQ 362
>NP_001165644
          Length = 585

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 1   VTDESTQ 7
           VTD STQ
Sbjct: 356 VTDSSTQ 362
>XP_005259931
          Length = 716

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   TDESTQRV 9
           TD ST+R+
Sbjct: 569 TDSSTRRI 576
>XP_005259930
          Length = 718

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   TDESTQRV 9
           TD ST+R+
Sbjct: 571 TDSSTRRI 578
>XP_006721215
          Length = 943

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>XP_006721214
          Length = 953

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>XP_006721213
          Length = 953

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>XP_006721212
          Length = 953

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>XP_005255869
          Length = 953

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>XP_006721211
          Length = 953

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  VTDESTQRV 9
          VTD+ TQ++
Sbjct: 30 VTDKQTQKL 38
>XP_005254426
          Length = 293

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   VTDESTQRV 9
           V+D+STQ V
Sbjct: 271 VSDKSTQTV 279
>XP_006719811
          Length = 582

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   VTDESTQR 8
           V+D STQR
Sbjct: 362 VSDTSTQR 369
>XP_005266249
          Length = 582

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   VTDESTQR 8
           V+D STQR
Sbjct: 362 VSDTSTQR 369
>XP_005246922
          Length = 617

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 1   VTDESTQ 7
           VTD STQ
Sbjct: 388 VTDSSTQ 394
>XP_006710028
          Length = 582

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   VTDESTQR 8
           V+D STQR
Sbjct: 362 VSDTSTQR 369
>XP_005275786
          Length = 582

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   VTDESTQR 8
           V+D STQR
Sbjct: 362 VSDTSTQR 369
>NP_001034703
          Length = 293

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   VTDESTQRV 9
           V+D+STQ V
Sbjct: 271 VSDKSTQTV 279
>NP_004534
          Length = 6669

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 6453 VTDPITERV 6461
>NP_001258137
          Length = 8560

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8344 VTDPITERV 8352
>NP_001157980
          Length = 8525

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8309 VTDPITERV 8317
>NP_001157979
          Length = 8525

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8309 VTDPITERV 8317
>NP_006807
          Length = 356

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   DESTQRV 9
           DE+T+RV
Sbjct: 167 DETTERV 173
>NP_057490
          Length = 167

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1 VTDESTQRV 9
         + DE+T+RV
Sbjct: 1 MADEATRRV 9
>XP_005246675
          Length = 5223

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 5007 VTDPITERV 5015
>XP_005246674
          Length = 7553

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 7337 VTDPITERV 7345
>XP_005246672
          Length = 8277

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8061 VTDPITERV 8069
>XP_005246670
          Length = 8282

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8066 VTDPITERV 8074
>XP_005246669
          Length = 8282

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8066 VTDPITERV 8074
>XP_005246668
          Length = 8308

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8092 VTDPITERV 8100
>XP_005246667
          Length = 8308

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8092 VTDPITERV 8100
>XP_005246665
          Length = 8339

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8123 VTDPITERV 8131
>XP_006712605
          Length = 8370

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8154 VTDPITERV 8162
>XP_006712604
          Length = 8370

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8154 VTDPITERV 8162
>XP_005246663
          Length = 8370

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8154 VTDPITERV 8162
>XP_005246660
          Length = 8370

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8154 VTDPITERV 8162
>XP_005246661
          Length = 8370

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8154 VTDPITERV 8162
>XP_005246659
          Length = 8401

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8185 VTDPITERV 8193
>XP_005246658
          Length = 8401

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8185 VTDPITERV 8193
>XP_005246657
          Length = 8432

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8216 VTDPITERV 8224
>XP_005246656
          Length = 8432

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8216 VTDPITERV 8224
>XP_005246655
          Length = 8463

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8247 VTDPITERV 8255
>XP_005246654
          Length = 8463

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8247 VTDPITERV 8255
>XP_005246653
          Length = 8463

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8247 VTDPITERV 8255
>XP_005246652
          Length = 8494

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8278 VTDPITERV 8286
>XP_005246649
          Length = 8494

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8278 VTDPITERV 8286
>XP_005246651
          Length = 8494

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8278 VTDPITERV 8286
>XP_005246650
          Length = 8494

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8278 VTDPITERV 8286
>XP_005246648
          Length = 8494

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8278 VTDPITERV 8286
>XP_005246647
          Length = 8494

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    VTDESTQRV 9
            VTD  T+RV
Sbjct: 8278 VTDPITERV 8286
>XP_005245311
          Length = 122

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1 VTDESTQRV 9
         + DE+T+RV
Sbjct: 1 MADEATRRV 9
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.300    0.112    0.266 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 513,645
Number of extensions: 1089
Number of successful extensions: 55
Number of sequences better than 10000.0: 55
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 55
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.3 bits)
S2: 28 (15.4 bits)

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