Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004324 18 1135 XP_005250103 18 1135 XP_005250102 18 1135 NP_001035194 17 3301 NP_659410 17 4312 XP_006719103 17 4312 XP_005253384 17 4312 XP_005253383 17 4312 NP_065784 16 5631 XP_005247723 16 5631 NP_001273598 15 9605 NP_001273599 15 9605 NP_861522 15 9605 NP_001273597 15 9605 NP_001269973 15 9605 NP_065094 15 9605 NP_055805 15 9605 NP_001269972 15 9605 NP_110436 15 9605 NP_919277 15 9605 XP_005267555 15 9605 XP_006720167 15 9605 XP_006720166 15 9605 XP_005267550 15 9605 XP_005267549 15 9605 XP_005267548 15 9605 XP_006720165 15 9605 XP_006720164 15 9605 XP_006720163 15 9605 XP_006720162 15 9605 XP_006720161 15 9605 XP_006719684 15 9605 XP_005265784 15 9605 XP_005265778 15 9605>NP_004324 Length = 766 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSSSASMDS 9 VSSSASMD+ Sbjct: 111 VSSSASMDT 119>XP_005250103 Length = 758 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSSSASMDS 9 VSSSASMD+ Sbjct: 111 VSSSASMDT 119>XP_005250102 Length = 767 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSSSASMDS 9 VSSSASMD+ Sbjct: 111 VSSSASMDT 119>NP_001035194 Length = 4493 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSSSASMDS 9 +SSSA++DS Sbjct: 3732 ISSSATLDS 3740>NP_659410 Length = 1274 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SSSASMDS 9 SSS SMDS Sbjct: 150 SSSCSMDS 157>XP_006719103 Length = 1296 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SSSASMDS 9 SSS SMDS Sbjct: 172 SSSCSMDS 179>XP_005253384 Length = 1311 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SSSASMDS 9 SSS SMDS Sbjct: 150 SSSCSMDS 157>XP_005253383 Length = 1333 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SSSASMDS 9 SSS SMDS Sbjct: 172 SSSCSMDS 179>NP_065784 Length = 1381 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 VSSSASMDS 9 VSSSAS++S Sbjct: 980 VSSSASVNS 988>XP_005247723 Length = 1481 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 VSSSASMDS 9 VSSSAS++S Sbjct: 1080 VSSSASVNS 1088>NP_001273598 Length = 945 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VSSSASMD 8 V SSA+MD Sbjct: 703 VKSSATMD 710>NP_001273599 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VSSSASMD 8 V SSA+MD Sbjct: 371 VKSSATMD 378>NP_861522 Length = 1098 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VSSSASMD 8 V SSA+MD Sbjct: 856 VKSSATMD 863>NP_001273597 Length = 998 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VSSSASMD 8 V SSA+MD Sbjct: 756 VKSSATMD 763>NP_001269973 Length = 2083 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 982 VTSSADVDS 990>NP_065094 Length = 437 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VSSSASMD 8 VSS +SMD Sbjct: 377 VSSGSSMD 384>NP_055805 Length = 2036 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 935 VTSSADVDS 943>NP_001269972 Length = 2049 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 948 VTSSADVDS 956>NP_110436 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SSASMDS 9 SSAS+DS Sbjct: 345 SSASLDS 351>NP_919277 Length = 2083 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 935 VTSSADVDS 943>XP_005267555 Length = 1325 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 176 VTSSADVDS 184>XP_006720167 Length = 1607 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 1441 VTSSADVDS 1449>XP_006720166 Length = 2083 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 982 VTSSADVDS 990>XP_005267550 Length = 2084 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 935 VTSSADVDS 943>XP_005267549 Length = 2130 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 982 VTSSADVDS 990>XP_005267548 Length = 2131 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 982 VTSSADVDS 990>XP_006720165 Length = 2542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 1441 VTSSADVDS 1449>XP_006720164 Length = 2542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 1441 VTSSADVDS 1449>XP_006720163 Length = 2543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 1394 VTSSADVDS 1402>XP_006720162 Length = 2589 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 1441 VTSSADVDS 1449>XP_006720161 Length = 2590 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSSSASMDS 9 V+SSA +DS Sbjct: 1441 VTSSADVDS 1449>XP_006719684 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SSASMDS 9 SSAS+DS Sbjct: 345 SSASLDS 351>XP_005265784 Length = 721 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VSSSASMD 8 V SSA+MD Sbjct: 479 VKSSATMD 486>XP_005265778 Length = 1098 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VSSSASMD 8 V SSA+MD Sbjct: 856 VKSSATMD 863Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.274 0.0837 0.168 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 327,762 Number of extensions: 469 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |