Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 20 509 NP_004561 20 509 XP_005253450 20 509 XP_006719151 20 509 NP_003046 17 3301 NP_001017420 16 5631 XP_006716360 16 5631 NP_004915 16 7355 NP_001245300 16 7355 NP_001095 16 7355 NP_780775 16 7355 NP_001230199 16 7355 NP_001094 16 7355 NP_001265272 16 7355 NP_055176 16 7355 NP_001093 16 7355 NP_001123477 16 7355 NP_001123476 16 7355 NP_060862 16 7355 XP_005259339 16 7355 XP_005259338 16 7355 XP_006723469 16 7355 XP_005263172 16 7355 NP_001073932 15 9605 NP_001368 15 9605 NP_057044 15 9605 NP_115523 15 9605 NP_001035862 15 9605 NP_001265322 15 9605 NP_065770 15 9605 NP_001265043 15 9605 NP_001265042 15 9605 NP_001455 15 9605 XP_006725182 15 9605 XP_006722357 15 9605 XP_005269230 15 9605 XP_005269231 15 9605 XP_005269229 15 9605 XP_006718966 15 9605 XP_005273525 15 9605>NP_001275701 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSLGFEQIV 9 VSLGF+QIV Sbjct: 36 VSLGFDQIV 44>NP_004561 Length = 1445 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSLGFEQIV 9 VSLGF+QIV Sbjct: 36 VSLGFDQIV 44>XP_005253450 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSLGFEQIV 9 VSLGF+QIV Sbjct: 36 VSLGFDQIV 44>XP_006719151 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSLGFEQIV 9 VSLGF+QIV Sbjct: 36 VSLGFDQIV 44>NP_003046 Length = 532 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SLGFEQI 8 SLGFEQ+ Sbjct: 445 SLGFEQL 451>NP_001017420 Length = 601 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LGFEQIV 9 LGF+Q+V Sbjct: 463 LGFQQVV 469>XP_006716360 Length = 601 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LGFEQIV 9 LGF+Q+V Sbjct: 463 LGFQQVV 469>NP_004915 Length = 911 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 127 VSIGAEEIV 135>NP_001245300 Length = 944 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 165 VSIGAEEIV 173>NP_001095 Length = 901 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 122 VSIGAEEIV 130>NP_780775 Length = 1026 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VSLG+E ++ Sbjct: 916 VSLGWEPVI 924>NP_001230199 Length = 1100 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VSLG+E ++ Sbjct: 990 VSLGWEPVI 998>NP_001094 Length = 894 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 115 VSIGAEEIV 123>NP_001265272 Length = 894 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 115 VSIGAEEIV 123>NP_055176 Length = 1100 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VSLG+E ++ Sbjct: 990 VSLGWEPVI 998>NP_001093 Length = 892 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 108 VSIGAEEIV 116>NP_001123477 Length = 887 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 108 VSIGAEEIV 116>NP_001123476 Length = 914 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 108 VSIGAEEIV 116>NP_060862 Length = 2104 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VSLGFEQIV 9 +SLGFE + Sbjct: 1709 LSLGFENFI 1717>XP_005259339 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 127 VSIGAEEIV 135>XP_005259338 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 127 VSIGAEEIV 135>XP_006723469 Length = 911 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 VS+G E+IV Sbjct: 127 VSIGAEEIV 135>XP_005263172 Length = 2104 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VSLGFEQIV 9 +SLGFE + Sbjct: 1709 LSLGFENFI 1717>NP_001073932 Length = 4314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SLGFEQIV 9 +L FEQI+ Sbjct: 643 ALAFEQII 650>NP_001368 Length = 4307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SLGFEQIV 9 +L FEQI+ Sbjct: 643 ALAFEQII 650>NP_057044 Length = 273 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VSLGFEQIV 9 ++LGFE+++ Sbjct: 162 LTLGFERVL 170>NP_115523 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 V +GFE+I+ Sbjct: 590 VHVGFEEIL 598>NP_001035862 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 V +GFE+I+ Sbjct: 590 VHVGFEEIL 598>NP_001265322 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 V +GFE+I+ Sbjct: 590 VHVGFEEIL 598>NP_065770 Length = 2036 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SLGFEQI 8 SLGFE++ Sbjct: 202 SLGFERL 208>NP_001265043 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 SLGFEQIV 9 S+GFE ++ Sbjct: 133 SVGFEHVI 140>NP_001265042 Length = 716 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 SLGFEQIV 9 S+GFE ++ Sbjct: 133 SVGFEHVI 140>NP_001455 Length = 735 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 SLGFEQIV 9 S+GFE ++ Sbjct: 133 SVGFEHVI 140>XP_006725182 Length = 705 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 SLGFEQIV 9 S+GFE ++ Sbjct: 133 SVGFEHVI 140>XP_006722357 Length = 347 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VSLGFEQ 7 VSLGF Q Sbjct: 182 VSLGFPQ 188>XP_005269230 Length = 743 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 V +GFE+I+ Sbjct: 621 VHVGFEEIL 629>XP_005269231 Length = 743 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 V +GFE+I+ Sbjct: 621 VHVGFEEIL 629>XP_005269229 Length = 743 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSLGFEQIV 9 V +GFE+I+ Sbjct: 621 VHVGFEEIL 629>XP_006718966 Length = 4300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SLGFEQIV 9 +L FEQI+ Sbjct: 643 ALAFEQII 650>XP_005273525 Length = 705 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 SLGFEQIV 9 S+GFE ++ Sbjct: 133 SVGFEHVI 140Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.147 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 482,585 Number of extensions: 505 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |