Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_004920 16 7355 NP_001186074 15 9605 NP_001186072 15 9605 NP_001073278 15 9605 NP_001263324 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSKNVMAMS 9 VSK+VMAMS Sbjct: 1930 VSKDVMAMS 1938>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VSKNVMAMS 9 VSK+VMAMS Sbjct: 1725 VSKDVMAMS 1733>NP_004920 Length = 261 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KNVMAMS 9 KN+MA+S Sbjct: 236 KNIMALS 242>NP_001186074 Length = 716 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKNVMAMS 9 S+NV+AM+ Sbjct: 550 SRNVLAMA 557>NP_001186072 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKNVMAMS 9 S+NV+AM+ Sbjct: 805 SRNVLAMA 812>NP_001073278 Length = 938 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKNVMAMS 9 S+NV+AM+ Sbjct: 772 SRNVLAMA 779>NP_001263324 Length = 100 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKNVMAMS 9 +KNVMA++ Sbjct: 85 TKNVMALT 92Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.107 0.239 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 235,956 Number of extensions: 132 Number of successful extensions: 7 Number of sequences better than 10000.0: 7 Number of HSP's gapped: 7 Number of HSP's successfully gapped: 7 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |