Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001155973 18 1135 NP_001020014 18 1135 NP_055903 18 1135 NP_001191111 17 3301 NP_002508 17 4312 NP_002438 16 5631 NP_001231866 16 5631 XP_005265227 16 5631 NP_114431 16 7355 NP_001156889 16 7355 NP_001156890 16 7355 XP_005272167 16 7355 XP_005272166 16 7355 XP_006714782 16 7355 XP_006714781 16 7355 XP_005272165 16 7355 XP_005272164 16 7355 XP_005272163 16 7355 XP_005272162 16 7355 XP_005272161 16 7355 XP_005272160 16 7355 XP_006714780 16 7355 NP_001128472 15 9605 NP_001128471 15 9605 NP_006823 15 9605 NP_055737 15 9605 NP_001028225 15 9605 NP_127497 15 9605 NP_127500 15 9605 NP_127499 15 9605 NP_777603 15 9605 NP_001167554 15 9605 NP_001167553 15 9605 NP_060322 15 9605 NP_001167552 15 9605 NP_001167449 15 9605 XP_005267342 15 9605 XP_006720073 15 9605 XP_006720072 15 9605 XP_006720071 15 9605>NP_001155973 Length = 1833 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 VS FLAQAQ Sbjct: 1723 VSRFLAQAQ 1731>NP_001020014 Length = 1029 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 VS FLAQAQ Sbjct: 919 VSRFLAQAQ 927>NP_055903 Length = 1723 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 VS FLAQAQ Sbjct: 1613 VSRFLAQAQ 1621>NP_001191111 Length = 388 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SHFLAQA 8 SHF+AQA Sbjct: 372 SHFVAQA 378>NP_002508 Length = 590 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 VSH L+QA+ Sbjct: 401 VSHVLSQAE 409>NP_002438 Length = 1400 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HFLAQ + Sbjct: 1296 LTHFLAQGR 1304>NP_001231866 Length = 1351 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HFLAQ + Sbjct: 1247 LTHFLAQGR 1255>XP_005265227 Length = 1401 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HFLAQ + Sbjct: 1297 LTHFLAQGR 1305>NP_114431 Length = 416 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 277 HFIAQA 282>NP_001156889 Length = 370 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 231 HFIAQA 236>NP_001156890 Length = 306 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 167 HFIAQA 172>XP_005272167 Length = 297 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 158 HFIAQA 163>XP_005272166 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 277 HFIAQA 282>XP_006714782 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 194 HFIAQA 199>XP_006714781 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 194 HFIAQA 199>XP_005272165 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 194 HFIAQA 199>XP_005272164 Length = 343 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 277 HFIAQA 282>XP_005272163 Length = 343 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 204 HFIAQA 209>XP_005272162 Length = 352 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 213 HFIAQA 218>XP_005272161 Length = 370 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 231 HFIAQA 236>XP_005272160 Length = 388 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 277 HFIAQA 282>XP_006714780 Length = 416 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 HF+AQA Sbjct: 277 HFIAQA 282>NP_001128472 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HF+A+ Q Sbjct: 577 ITHFIARFQ 585>NP_001128471 Length = 687 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HF+A+ Q Sbjct: 577 ITHFIARFQ 585>NP_006823 Length = 680 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HF+A+ Q Sbjct: 570 ITHFIARFQ 578>NP_055737 Length = 1429 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 H+LAQA Sbjct: 553 HYLAQA 558>NP_001028225 Length = 1375 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 H+LAQA Sbjct: 553 HYLAQA 558>NP_127497 Length = 1473 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 H+LAQA Sbjct: 553 HYLAQA 558>NP_127500 Length = 1399 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 H+LAQA Sbjct: 553 HYLAQA 558>NP_127499 Length = 1443 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HFLAQA 8 H+LAQA Sbjct: 553 HYLAQA 558>NP_777603 Length = 122 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SHFLAQA 8 SH+ AQA Sbjct: 33 SHYFAQA 39>NP_001167554 Length = 1039 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VSHFLAQAQ 9 + H LAQA+ Sbjct: 250 IPHILAQAR 258>NP_001167553 Length = 1040 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VSHFLAQAQ 9 + H LAQA+ Sbjct: 251 IPHILAQAR 259>NP_060322 Length = 1062 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VSHFLAQAQ 9 + H LAQA+ Sbjct: 273 IPHILAQAR 281>NP_001167552 Length = 1062 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VSHFLAQAQ 9 + H LAQA+ Sbjct: 273 IPHILAQAR 281>NP_001167449 Length = 92 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SHFLAQA 8 SH+ AQA Sbjct: 3 SHYFAQA 9>XP_005267342 Length = 691 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HF+A+ Q Sbjct: 581 ITHFIARFQ 589>XP_006720073 Length = 695 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HF+A+ Q Sbjct: 585 ITHFIARFQ 593>XP_006720072 Length = 698 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HF+A+ Q Sbjct: 588 ITHFIARFQ 596>XP_006720071 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VSHFLAQAQ 9 ++HF+A+ Q Sbjct: 596 ITHFIARFQ 604Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.124 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 444,216 Number of extensions: 424 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |