Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 18 1135 NP_653080 18 1135 XP_005267292 18 1135 XP_005267291 18 1135 XP_005267290 18 1135 NP_001019765 17 2528 NP_001136156 17 3301 XP_005266652 17 3301 XP_005266651 17 3301 XP_006719957 17 3301 XP_005266650 17 3301 NP_005549 16 5631 NP_079471 15 9605 NP_001269914 15 9605 NP_056234 15 9605 NP_001129225 15 9605 NP_001129224 15 9605 NP_009196 15 9605 NP_060932 15 9605 XP_005274542 15 9605 XP_006716560 15 9605 XP_006716559 15 9605 NP_001131032 15 9605>NP_005091 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 SEKLTASE Sbjct: 347 SEKLTASE 354>NP_653080 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 SEKLTASE Sbjct: 249 SEKLTASE 256>XP_005267292 Length = 1677 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 SEKLTASE Sbjct: 242 SEKLTASE 249>XP_005267291 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 SEKLTASE Sbjct: 249 SEKLTASE 256>XP_005267290 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 SEKLTASE Sbjct: 347 SEKLTASE 354>NP_001019765 Length = 145 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 VSEKLTASE 9 VSE+LTA+E Sbjct: 68 VSEELTAAE 76>NP_001136156 Length = 669 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 S+KLTASE Sbjct: 423 SKKLTASE 430>XP_005266652 Length = 487 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 S+KLTASE Sbjct: 241 SKKLTASE 248>XP_005266651 Length = 669 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 S+KLTASE Sbjct: 423 SKKLTASE 430>XP_006719957 Length = 669 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 S+KLTASE Sbjct: 423 SKKLTASE 430>XP_005266650 Length = 669 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SEKLTASE 9 S+KLTASE Sbjct: 423 SKKLTASE 430>NP_005549 Length = 517 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSEKLTASE 9 +SEK+ ASE Sbjct: 202 ISEKVLASE 210>NP_079471 Length = 372 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SEKLTASE 9 SE+LTA E Sbjct: 324 SERLTAPE 331>NP_001269914 Length = 206 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SEKLTASE 9 SE+LTA E Sbjct: 158 SERLTAPE 165>NP_056234 Length = 2828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VSEKLTA 7 +SEK+TA Sbjct: 2548 ISEKITA 2554>NP_001129225 Length = 601 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SEKLTASE 9 SEK+ ASE Sbjct: 178 SEKILASE 185>NP_001129224 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SEKLTASE 9 SEK+ ASE Sbjct: 178 SEKILASE 185>NP_009196 Length = 644 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SEKLTASE 9 SEK+ ASE Sbjct: 178 SEKILASE 185>NP_060932 Length = 75 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSEKLTASE 9 ++EKLTA E Sbjct: 50 LNEKLTALE 58>XP_005274542 Length = 2853 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VSEKLTA 7 +SEK+TA Sbjct: 2573 ISEKITA 2579>XP_006716560 Length = 206 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SEKLTASE 9 SE+LTA E Sbjct: 158 SERLTAPE 165>XP_006716559 Length = 262 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SEKLTASE 9 SE+LTA E Sbjct: 214 SERLTAPE 221>NP_001131032 Length = 566 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSEKLTAS 8 VSE+LTA+ Sbjct: 24 VSEELTAA 31Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.280 0.0987 0.206 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 327,610 Number of extensions: 191 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |