Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 18 1482 NP_001075109 18 1482 NP_065783 17 3301 NP_059989 17 3301 XP_006715590 17 3301 XP_005267126 17 3301 XP_006715589 17 3301 XP_006715588 17 3301 XP_006715587 17 3301 XP_006715586 17 3301 NP_036374 17 4312 NP_001005190 16 5631 NP_001123481 16 7355 NP_872431 16 7355 XP_006714629 16 7355 XP_006712069 16 7355 XP_006712068 16 7355 XP_005262670 16 7355 NP_001026 15 9605 XP_006725534 15 9605 XP_006711873 15 9605 XP_006711871 15 9605 XP_006711870 15 9605 XP_006711869 15 9605 XP_006711868 15 9605 XP_006711867 15 9605 XP_006711866 15 9605 XP_006711865 15 9605 NP_443155 15 9605>NP_008835 Length = 4128 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 VSAVLN ML Sbjct: 1593 VSAVLNGML 1601>NP_001075109 Length = 4097 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 VSAVLN ML Sbjct: 1593 VSAVLNGML 1601>NP_065783 Length = 2249 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSAVLNSML 9 +SAVLNS++ Sbjct: 2227 ISAVLNSLV 2235>NP_059989 Length = 2236 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSAVLNSML 9 +SAVLNS++ Sbjct: 2214 ISAVLNSLV 2222>XP_006715590 Length = 2277 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSAVLNSML 9 +SAVLNS++ Sbjct: 2255 ISAVLNSLV 2263>XP_005267126 Length = 2316 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSAVLNSML 9 +SAVLNS++ Sbjct: 2294 ISAVLNSLV 2302>XP_006715589 Length = 2320 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSAVLNSML 9 +SAVLNS++ Sbjct: 2298 ISAVLNSLV 2306>XP_006715588 Length = 2330 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSAVLNSML 9 +SAVLNS++ Sbjct: 2308 ISAVLNSLV 2316>XP_006715587 Length = 2359 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSAVLNSML 9 +SAVLNS++ Sbjct: 2337 ISAVLNSLV 2345>XP_006715586 Length = 2373 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VSAVLNSML 9 +SAVLNS++ Sbjct: 2351 ISAVLNSLV 2359>NP_036374 Length = 266 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 VSA LNS+L Sbjct: 29 VSATLNSVL 37>NP_001005190 Length = 309 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 + +VLNSML Sbjct: 150 IMSVLNSML 158>NP_001123481 Length = 908 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 +SA LNS+L Sbjct: 522 ISASLNSLL 530>NP_872431 Length = 908 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 +SA LNS+L Sbjct: 522 ISASLNSLL 530>XP_006714629 Length = 409 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SAVLNSML 9 SAVLN+M+ Sbjct: 31 SAVLNAMV 38>XP_006712069 Length = 908 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 +SA LNS+L Sbjct: 522 ISASLNSLL 530>XP_006712068 Length = 908 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 +SA LNS+L Sbjct: 522 ISASLNSLL 530>XP_005262670 Length = 908 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 +SA LNS+L Sbjct: 522 ISASLNSLL 530>NP_001026 Length = 4967 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4694 LSAVLNSI 4701>XP_006725534 Length = 1174 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 +SA LNS+L Sbjct: 860 ISAELNSVL 868>XP_006711873 Length = 4954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4681 LSAVLNSI 4688>XP_006711871 Length = 4906 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4633 LSAVLNSI 4640>XP_006711870 Length = 4965 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4692 LSAVLNSI 4699>XP_006711869 Length = 4973 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4700 LSAVLNSI 4707>XP_006711868 Length = 4975 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4702 LSAVLNSI 4709>XP_006711867 Length = 4977 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4704 LSAVLNSI 4711>XP_006711866 Length = 4984 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4711 LSAVLNSI 4718>XP_006711865 Length = 4985 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VSAVLNSM 8 +SAVLNS+ Sbjct: 4712 LSAVLNSI 4719>NP_443155 Length = 1325 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSAVLNSML 9 +SA LNS+L Sbjct: 1011 ISAELNSVL 1019Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.122 0.274 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 260,160 Number of extensions: 152 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |