Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_073713 20 390 NP_078966 17 4312 NP_002494 16 5631 NP_005867 16 5631 NP_001230045 16 5631 XP_006723290 16 5631 XP_006723289 16 5631 XP_006712256 16 5631 XP_005246298 16 5631 XP_005246297 16 5631 XP_005246299 16 5631 XP_005246296 16 5631 XP_006712254 16 5631 XP_005246295 16 5631 XP_006712253 16 5631 XP_006712252 16 5631 XP_005246294 16 5631 XP_006712251 16 5631 XP_005246293 16 5631 XP_005246292 16 5631 XP_006712250 16 5631 NP_000593 16 7355 NP_006508 16 7355 XP_005255101 16 7355 NP_150296 16 7355 NP_002408 15 9605 NP_001139438 15 9605 NP_001229468 15 9605 NP_054790 15 9605 NP_001076 15 9605 XP_006723818 15 9605 XP_006723816 15 9605 XP_006723815 15 9605 XP_006723814 15 9605 XP_006723813 15 9605 XP_005260405 15 9605 XP_006717927 15 9605>NP_073713 Length = 985 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VSAMLAPEP 9 VS MLAPEP Sbjct: 551 VSTMLAPEP 559>NP_078966 Length = 14507 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSAMLAPEP 9 +SAM++P P Sbjct: 7398 LSAMISPSP 7406>NP_002494 Length = 356 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAMLAPEP 9 SAML P P Sbjct: 280 SAMLRPNP 287>NP_005867 Length = 3267 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2907 VSAPPAPEP 2915>NP_001230045 Length = 270 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAMLAPEP 9 SAML P P Sbjct: 194 SAMLRPNP 201>XP_006723290 Length = 351 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAMLAPEP 9 SAML P P Sbjct: 275 SAMLRPNP 282>XP_006723289 Length = 416 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAMLAPEP 9 SAML P P Sbjct: 340 SAMLRPNP 347>XP_006712256 Length = 2418 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2058 VSAPPAPEP 2066>XP_005246298 Length = 2418 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2058 VSAPPAPEP 2066>XP_005246297 Length = 2418 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2058 VSAPPAPEP 2066>XP_005246299 Length = 2480 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2120 VSAPPAPEP 2128>XP_005246296 Length = 2475 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2115 VSAPPAPEP 2123>XP_006712254 Length = 2475 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2115 VSAPPAPEP 2123>XP_005246295 Length = 3114 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2754 VSAPPAPEP 2762>XP_006712253 Length = 3117 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2757 VSAPPAPEP 2765>XP_006712252 Length = 3163 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2803 VSAPPAPEP 2811>XP_005246294 Length = 3173 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2813 VSAPPAPEP 2821>XP_006712251 Length = 3176 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2816 VSAPPAPEP 2824>XP_005246293 Length = 3206 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2846 VSAPPAPEP 2854>XP_005246292 Length = 3208 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2848 VSAPPAPEP 2856>XP_006712250 Length = 3248 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 VSA APEP Sbjct: 2888 VSAPPAPEP 2896>NP_000593 Length = 402 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VSAMLAPE 8 VSA +APE Sbjct: 366 VSARMAPE 373>NP_006508 Length = 539 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MLAPEP 9 MLAP+P Sbjct: 517 MLAPDP 522>XP_005255101 Length = 922 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 V AML+P P Sbjct: 754 VGAMLSPLP 762>NP_150296 Length = 974 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VSAMLAPEP 9 V AML+P P Sbjct: 806 VGAMLSPLP 814>NP_002408 Length = 3256 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 AMLAPEP 9 AML P+P Sbjct: 1173 AMLTPKP 1179>NP_001139438 Length = 2896 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 AMLAPEP 9 AML P+P Sbjct: 813 AMLTPKP 819>NP_001229468 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAMLAPEP 9 S+M+AP P Sbjct: 192 SSMMAPGP 199>NP_054790 Length = 2063 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAMLAPEP 9 S+M+AP P Sbjct: 192 SSMMAPGP 199>NP_001076 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VSAMLAPE 8 V AML PE Sbjct: 287 VEAMLLPE 294>XP_006723818 Length = 1975 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAMLAPEP 9 S+M+AP P Sbjct: 192 SSMMAPGP 199>XP_006723816 Length = 2034 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAMLAPEP 9 S+M+AP P Sbjct: 192 SSMMAPGP 199>XP_006723815 Length = 2051 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAMLAPEP 9 S+M+AP P Sbjct: 192 SSMMAPGP 199>XP_006723814 Length = 2052 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAMLAPEP 9 S+M+AP P Sbjct: 192 SSMMAPGP 199>XP_006723813 Length = 2062 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAMLAPEP 9 S+M+AP P Sbjct: 192 SSMMAPGP 199>XP_005260405 Length = 2063 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAMLAPEP 9 S+M+AP P Sbjct: 192 SSMMAPGP 199>XP_006717927 Length = 2406 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 AMLAPEP 9 AML P+P Sbjct: 323 AMLTPKP 329Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.122 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 908,109 Number of extensions: 667 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |