Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_113662 20 390 XP_005253855 20 390 XP_005253854 20 390 XP_005253853 20 390 NP_008835 19 665 NP_001075109 19 665 NP_005551 17 3301 XP_006723859 17 3301 NP_536799 17 4312 NP_006827 17 4312 NP_061846 16 5631 NP_714963 16 5631 NP_821079 16 5631 NP_000675 16 5631 NP_055884 16 5631 NP_001258549 16 5631 XP_006721884 16 5631 XP_005257286 16 5631 XP_005255914 16 5631 XP_005255913 16 5631 XP_005255912 16 5631 XP_006721234 16 5631 NP_079511 16 7355 NP_003738 16 7355 NP_443100 16 7355 NP_001193594 16 7355 XP_006724942 16 7355 XP_005270242 16 7355 XP_006716326 16 7355 XP_006711694 16 7355 XP_005245671 16 7355 XP_006710331 16 7355 NP_002011 15 9605 NP_891555 15 9605 NP_000207 15 9605 NP_073617 15 9605 NP_112489 15 9605 XP_005274558 15 9605 XP_006720541 15 9605 XP_005254378 15 9605 XP_005254377 15 9605 XP_006719839 15 9605 XP_006718069 15 9605 XP_005270268 15 9605 XP_006718068 15 9605 XP_005270267 15 9605 XP_006718067 15 9605 XP_005270266 15 9605 XP_005270265 15 9605 XP_006710034 15 9605 NP_699202 15 9605 NP_001004474 15 9605>NP_113662 Length = 281 Score = 20.0 bits (40), Expect = 390 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 VSAGCLARL 9 +SAGCL+RL Sbjct: 184 ISAGCLSRL 192>XP_005253855 Length = 279 Score = 20.0 bits (40), Expect = 390 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 VSAGCLARL 9 +SAGCL+RL Sbjct: 184 ISAGCLSRL 192>XP_005253854 Length = 281 Score = 20.0 bits (40), Expect = 390 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 VSAGCLARL 9 +SAGCL+RL Sbjct: 184 ISAGCLSRL 192>XP_005253853 Length = 294 Score = 20.0 bits (40), Expect = 390 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 VSAGCLARL 9 +SAGCL+RL Sbjct: 184 ISAGCLSRL 192>NP_008835 Length = 4128 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VSAGCLARL 9 VSAGCLA L Sbjct: 2876 VSAGCLASL 2884>NP_001075109 Length = 4097 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VSAGCLARL 9 VSAGCLA L Sbjct: 2876 VSAGCLASL 2884>NP_005551 Length = 3695 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAGCLARL 9 VSAGC A L Sbjct: 3111 VSAGCTADL 3119>XP_006723859 Length = 3700 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VSAGCLARL 9 VSAGC A L Sbjct: 3111 VSAGCTADL 3119>NP_536799 Length = 445 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SAGCLA 7 SAGCLA Sbjct: 21 SAGCLA 26>NP_006827 Length = 2671 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAGCLARL 9 SAGCL L Sbjct: 2446 SAGCLGEL 2453>NP_061846 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VSAGCLA 7 VSAGC A Sbjct: 77 VSAGCYA 83>NP_714963 Length = 92 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VSAGCLA 7 VSAGC A Sbjct: 47 VSAGCYA 53>NP_821079 Length = 581 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VSAGCL 6 +SAGCL Sbjct: 59 ISAGCL 64>NP_000675 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SAGCLAR 8 ++GCLAR Sbjct: 411 ASGCLAR 417>NP_055884 Length = 1284 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AGCLAR 8 AGC+AR Sbjct: 1093 AGCMAR 1098>NP_001258549 Length = 1224 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AGCLAR 8 AGC+AR Sbjct: 1033 AGCMAR 1038>XP_006721884 Length = 461 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 S+GCL R+ Sbjct: 450 SSGCLTRV 457>XP_005257286 Length = 562 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 S+GCL R+ Sbjct: 551 SSGCLTRV 558>XP_005255914 Length = 1167 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AGCLAR 8 AGC+AR Sbjct: 976 AGCMAR 981>XP_005255913 Length = 1224 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AGCLAR 8 AGC+AR Sbjct: 1033 AGCMAR 1038>XP_005255912 Length = 1286 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AGCLAR 8 AGC+AR Sbjct: 1095 AGCMAR 1100>XP_006721234 Length = 1299 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AGCLAR 8 AGC+AR Sbjct: 1108 AGCMAR 1113>NP_079511 Length = 1166 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GCLARL 9 GCLAR+ Sbjct: 656 GCLARV 661>NP_003738 Length = 1327 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GCLARL 9 GCLAR+ Sbjct: 814 GCLARV 819>NP_443100 Length = 613 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VSAGCLAR 8 ++ GCLAR Sbjct: 182 LALGCLAR 189>NP_001193594 Length = 613 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VSAGCLAR 8 ++ GCLAR Sbjct: 182 LALGCLAR 189>XP_006724942 Length = 641 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAGCLA 7 SAGC+A Sbjct: 595 SAGCMA 600>XP_005270242 Length = 734 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GCLARL 9 GCLAR+ Sbjct: 224 GCLARV 229>XP_006716326 Length = 1316 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GCLARL 9 GCLAR+ Sbjct: 814 GCLARV 819>XP_006711694 Length = 596 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VSAGCLAR 8 ++ GCLAR Sbjct: 165 LALGCLAR 172>XP_005245671 Length = 613 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VSAGCLAR 8 ++ GCLAR Sbjct: 182 LALGCLAR 189>XP_006710331 Length = 641 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAGCLA 7 SAGC+A Sbjct: 595 SAGCMA 600>NP_002011 Length = 1298 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GCLAR 8 GCLAR Sbjct: 1238 GCLAR 1242>NP_891555 Length = 1363 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GCLAR 8 GCLAR Sbjct: 1238 GCLAR 1242>NP_000207 Length = 680 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAGCLA 7 S+GCLA Sbjct: 19 SSGCLA 24>NP_073617 Length = 391 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAGCLA 7 SAGC+A Sbjct: 287 SAGCVA 292>NP_112489 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 +AGC+A L Sbjct: 175 AAGCVATL 182>XP_005274558 Length = 420 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAGCLA 7 S+GCLA Sbjct: 19 SSGCLA 24>XP_006720541 Length = 123 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VSAGCLARL 9 V+ CLARL Sbjct: 25 VTDDCLARL 33>XP_005254378 Length = 140 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VSAGCLARL 9 V+ CLARL Sbjct: 42 VTDDCLARL 50>XP_005254377 Length = 231 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VSAGCLARL 9 V+ CLARL Sbjct: 133 VTDDCLARL 141>XP_006719839 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GCLAR 8 GCLAR Sbjct: 382 GCLAR 386>XP_006718069 Length = 193 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 +AGC+A L Sbjct: 175 AAGCVATL 182>XP_005270268 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 +AGC+A L Sbjct: 76 AAGCVATL 83>XP_006718068 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 +AGC+A L Sbjct: 76 AAGCVATL 83>XP_005270267 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 +AGC+A L Sbjct: 76 AAGCVATL 83>XP_006718067 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 +AGC+A L Sbjct: 76 AAGCVATL 83>XP_005270266 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 +AGC+A L Sbjct: 76 AAGCVATL 83>XP_005270265 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAGCLARL 9 +AGC+A L Sbjct: 76 AAGCVATL 83>XP_006710034 Length = 596 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VSAGCLA 7 VSAGC + Sbjct: 214 VSAGCFS 220>NP_699202 Length = 690 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GCLAR 8 GCLAR Sbjct: 505 GCLAR 509>NP_001004474 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VSAGCL 6 V+AGCL Sbjct: 220 VAAGCL 225Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 544,951 Number of extensions: 553 Number of successful extensions: 52 Number of sequences better than 10000.0: 52 Number of HSP's gapped: 52 Number of HSP's successfully gapped: 52 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |