Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001032238 17 4312 NP_006812 17 4312 XP_005256795 17 4312 NP_002887 16 5631 NP_001070143 16 5631 NP_660340 16 5631 NP_001129120 16 5631 NP_113680 16 5631 NP_002835 16 5631 NP_001185774 16 5631 XP_006725089 16 5631 XP_006725088 16 5631 XP_006725087 16 5631 XP_006725086 16 5631 XP_006725085 16 5631 XP_006725084 16 5631 XP_006725083 16 5631 XP_006725082 16 5631 XP_006715604 16 5631 XP_006715603 16 5631 XP_005267143 16 5631 XP_006715602 16 5631 XP_006715601 16 5631 XP_005267142 16 5631 XP_006715600 16 5631 XP_005267139 16 5631 XP_006715599 16 5631 XP_006715598 16 5631 NP_001269388 16 7355 NP_001171313 16 7355 NP_003130 16 7355 NP_005550 16 7355 XP_005262993 16 7355 XP_005262994 16 7355 NP_938022 16 7355 NP_005752 15 9605 NP_060103 15 9605 NP_060350 15 9605 XP_005259613 15 9605 XP_006719249 15 9605 XP_005264448 15 9605 XP_005264447 15 9605 XP_005264446 15 9605 NP_443175 15 9605>NP_001032238 Length = 421 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 VRTPL ++L Sbjct: 98 VRTPLAVEL 106>NP_006812 Length = 483 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 VRTPL ++L Sbjct: 160 VRTPLAVEL 168>XP_005256795 Length = 294 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RTPLTM 7 RTPLTM Sbjct: 245 RTPLTM 250>NP_002887 Length = 364 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VRTPLTM 7 VRTP TM Sbjct: 197 VRTPYTM 203>NP_001070143 Length = 528 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RTPLTMK 8 R PLTMK Sbjct: 60 RKPLTMK 66>NP_660340 Length = 92 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RTPLTMK 8 R PLTMK Sbjct: 60 RKPLTMK 66>NP_001129120 Length = 1446 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>NP_113680 Length = 359 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VRTPLTM 7 VRTP TM Sbjct: 197 VRTPYTM 203>NP_002835 Length = 1440 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>NP_001185774 Length = 339 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VRTPLTM 7 VRTP TM Sbjct: 172 VRTPYTM 178>XP_006725089 Length = 845 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006725088 Length = 866 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006725087 Length = 869 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006725086 Length = 1057 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 1 MRTPKTLKI 9>XP_006725085 Length = 1375 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 319 MRTPKTLKI 327>XP_006725084 Length = 1375 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 319 MRTPKTLKI 327>XP_006725083 Length = 1439 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006725082 Length = 1445 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006715604 Length = 869 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006715603 Length = 869 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_005267143 Length = 890 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006715602 Length = 893 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006715601 Length = 1081 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 1 MRTPKTLKI 9>XP_005267142 Length = 1439 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006715600 Length = 1445 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_005267139 Length = 1464 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006715599 Length = 1469 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>XP_006715598 Length = 1470 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 +RTP T+K+ Sbjct: 390 MRTPKTLKI 398>NP_001269388 Length = 328 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VRTPLTMKL 9 +RTPLT L Sbjct: 308 LRTPLTAHL 316>NP_001171313 Length = 610 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VRTPLTMK 8 +R P TMK Sbjct: 102 IRAPTTMK 109>NP_003130 Length = 638 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VRTPLTMK 8 +R P TMK Sbjct: 130 IRAPTTMK 137>NP_005550 Length = 3075 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VRTPLTM 7 VRTP+T+ Sbjct: 1166 VRTPVTL 1172>XP_005262993 Length = 776 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VRTPLTM 7 + TPLTM Sbjct: 122 IHTPLTM 128>XP_005262994 Length = 776 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VRTPLTM 7 + TPLTM Sbjct: 122 IHTPLTM 128>NP_938022 Length = 776 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VRTPLTM 7 + TPLTM Sbjct: 122 IHTPLTM 128>NP_005752 Length = 1568 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 VRT +T+KL Sbjct: 818 VRTNVTVKL 826>NP_060103 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TPLTMK 8 TPLT+K Sbjct: 179 TPLTLK 184>NP_060350 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TPLTMK 8 TPLT+K Sbjct: 147 TPLTLK 152>XP_005259613 Length = 267 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VRTPLT 6 VRTP+T Sbjct: 18 VRTPMT 23>XP_006719249 Length = 1555 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VRTPLTMKL 9 VRT +T+KL Sbjct: 818 VRTNVTVKL 826>XP_005264448 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TPLTMK 8 TPLT+K Sbjct: 147 TPLTLK 152>XP_005264447 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TPLTMK 8 TPLT+K Sbjct: 147 TPLTLK 152>XP_005264446 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TPLTMK 8 TPLT+K Sbjct: 147 TPLTLK 152>NP_443175 Length = 425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TPLTMK 8 TPLT+K Sbjct: 165 TPLTLK 170Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 632,288 Number of extensions: 869 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |