Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1482 NP_671714 18 1482 XP_006715890 18 1482 XP_005250160 18 1482 XP_005250159 18 1482 XP_006714139 17 3301 NP_001177779 17 4312 NP_001177776 17 4312 NP_037448 17 4312 NP_001008226 17 4312 NP_001177778 17 4312 NP_001177777 17 4312 NP_775082 16 5631 NP_003377 16 5631 NP_006651 16 5631 NP_001284 16 5631 NP_055935 16 7355 NP_060522 16 7355 NP_060439 16 7355 XP_005256097 16 7355 XP_006712689 16 7355 XP_005263764 16 7355>NP_005742 Length = 3907 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRTEDALKS 9 V TEDALKS Sbjct: 2468 VLTEDALKS 2476>NP_671714 Length = 3899 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRTEDALKS 9 V TEDALKS Sbjct: 2460 VLTEDALKS 2468>XP_006715890 Length = 3860 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRTEDALKS 9 V TEDALKS Sbjct: 2421 VLTEDALKS 2429>XP_005250160 Length = 3939 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRTEDALKS 9 V TEDALKS Sbjct: 2500 VLTEDALKS 2508>XP_005250159 Length = 3952 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRTEDALKS 9 V TEDALKS Sbjct: 2513 VLTEDALKS 2521>XP_006714139 Length = 950 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRTEDALK 8 V TEDALK Sbjct: 940 VSTEDALK 947>NP_001177779 Length = 713 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRTEDALKS 9 +R+EDAL++ Sbjct: 164 IRSEDALRA 172>NP_001177776 Length = 642 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRTEDALKS 9 +R+EDAL++ Sbjct: 164 IRSEDALRA 172>NP_037448 Length = 639 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRTEDALKS 9 +R+EDAL++ Sbjct: 164 IRSEDALRA 172>NP_001008226 Length = 572 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRTEDALKS 9 +R+EDAL++ Sbjct: 164 IRSEDALRA 172>NP_001177778 Length = 710 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRTEDALKS 9 +R+EDAL++ Sbjct: 164 IRSEDALRA 172>NP_001177777 Length = 575 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRTEDALKS 9 +R+EDAL++ Sbjct: 164 IRSEDALRA 172>NP_775082 Length = 2721 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VRTEDAL 7 V+TEDAL Sbjct: 2499 VKTEDAL 2505>NP_003377 Length = 2812 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VRTEDAL 7 V+TEDAL Sbjct: 2499 VKTEDAL 2505>NP_006651 Length = 633 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TEDALKS 9 TEDALK+ Sbjct: 543 TEDALKA 549>NP_001284 Length = 237 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VRTEDALK 8 VRTED+++ Sbjct: 205 VRTEDSIR 212>NP_055935 Length = 4169 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TEDALK 8 TEDALK Sbjct: 2163 TEDALK 2168>NP_060522 Length = 782 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRTEDALKS 9 ++TED+LK+ Sbjct: 726 LQTEDSLKA 734>NP_060439 Length = 819 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TEDALK 8 TEDALK Sbjct: 174 TEDALK 179>XP_005256097 Length = 754 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRTEDALKS 9 ++TED+LK+ Sbjct: 698 LQTEDSLKA 706>XP_006712689 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TEDALK 8 TEDALK Sbjct: 179 TEDALK 184>XP_005263764 Length = 824 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TEDALK 8 TEDALK Sbjct: 179 TEDALK 184Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.118 0.278 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 448,532 Number of extensions: 607 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |