Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001261 21 175 XP_005271924 21 175 XP_005271923 21 175 NP_065861 18 1935 XP_005267973 18 1935 NP_001036037 17 2528 NP_112211 17 2528 NP_001262 17 2528 XP_005267209 17 2528 NP_444507 17 4312 XP_006724088 17 4312 NP_000161 16 5631 NP_037535 16 5631 NP_001034966 16 5631 XP_006723237 16 5631 XP_006723236 16 5631 XP_006723235 16 5631 XP_006723234 16 5631 XP_005248127 16 5631 XP_005248126 16 5631 XP_005248125 16 5631 XP_005248124 16 5631 XP_005248123 16 5631 XP_005248122 16 5631 XP_005248121 16 5631 XP_005248120 16 5631 XP_006714059 16 5631 XP_005248119 16 5631 XP_005248118 16 5631 XP_005248117 16 5631 XP_005248116 16 5631 XP_005248115 16 5631 XP_005248114 16 5631 NP_000072 16 7355 NP_001068567 16 7355 NP_003717 16 7355 NP_525023 16 7355 XP_005257813 16 7355 XP_005257814 16 7355 XP_005257812 16 7355 XP_006721856 16 7355 XP_006721855 16 7355 XP_006721854 16 7355 XP_006721853 16 7355 XP_006711794 16 7355 XP_005273086 16 7355 XP_005273085 16 7355 XP_005273084 16 7355 NP_619634 16 7355 NP_115495 15 9605 NP_005989 15 9605 NP_001008800 15 9605 NP_055928 15 9605 XP_005256618 15 9605 XP_005256617 15 9605 NP_001152967 15 9605>NP_001261 Length = 1710 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VRGMRKLDN 9 VRGM+KLDN Sbjct: 343 VRGMKKLDN 351>XP_005271924 Length = 1710 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VRGMRKLDN 9 VRGM+KLDN Sbjct: 343 VRGMKKLDN 351>XP_005271923 Length = 1798 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VRGMRKLDN 9 VRGM+KLDN Sbjct: 343 VRGMKKLDN 351>NP_065861 Length = 509 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 VRGM KLD Sbjct: 79 VRGMTKLD 86>XP_005267973 Length = 537 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 VRGM KLD Sbjct: 107 VRGMTKLD 114>NP_001036037 Length = 501 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRGMRKLDN 9 V+G++KL+N Sbjct: 332 VKGLKKLEN 340>NP_112211 Length = 165 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VRGMRKL 7 +RGMRKL Sbjct: 151 IRGMRKL 157>NP_001262 Length = 1828 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VRGMRKLDN 9 V+G++KL+N Sbjct: 332 VKGLKKLEN 340>XP_005267209 Length = 108 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VRGMRKL 7 +RGMRKL Sbjct: 94 IRGMRKL 100>NP_444507 Length = 686 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++ +RKLDN Sbjct: 579 LKALRKLDN 587>XP_006724088 Length = 646 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++ +RKLDN Sbjct: 539 LKALRKLDN 547>NP_000161 Length = 1020 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 VR M+KL+N Sbjct: 535 VRYMKKLEN 543>NP_037535 Length = 753 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMRKLDN 9 RG+R LDN Sbjct: 659 RGIRFLDN 666>NP_001034966 Length = 760 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMRKLDN 9 RG+R LDN Sbjct: 666 RGIRFLDN 673>XP_006723237 Length = 641 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMRKLDN 9 RG+R LDN Sbjct: 547 RGIRFLDN 554>XP_006723236 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMRKLDN 9 RG+R LDN Sbjct: 562 RGIRFLDN 569>XP_006723235 Length = 768 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMRKLDN 9 RG+R LDN Sbjct: 674 RGIRFLDN 681>XP_006723234 Length = 775 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMRKLDN 9 RG+R LDN Sbjct: 681 RGIRFLDN 688>XP_005248127 Length = 1322 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 799 LKGQRKLDD 807>XP_005248126 Length = 1359 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 528 LKGQRKLDD 536>XP_005248125 Length = 1439 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 608 LKGQRKLDD 616>XP_005248124 Length = 1467 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 640 LKGQRKLDD 648>XP_005248123 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 640 LKGQRKLDD 648>XP_005248122 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 640 LKGQRKLDD 648>XP_005248121 Length = 1543 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 712 LKGQRKLDD 720>XP_005248120 Length = 1549 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 718 LKGQRKLDD 726>XP_006714059 Length = 1600 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 799 LKGQRKLDD 807>XP_005248119 Length = 1601 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 799 LKGQRKLDD 807>XP_005248118 Length = 1602 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 799 LKGQRKLDD 807>XP_005248117 Length = 1626 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 799 LKGQRKLDD 807>XP_005248116 Length = 1627 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 799 LKGQRKLDD 807>XP_005248115 Length = 1629 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 799 LKGQRKLDD 807>XP_005248114 Length = 1630 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 ++G RKLD+ Sbjct: 799 LKGQRKLDD 807>NP_000072 Length = 3801 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 +RGM K+D Sbjct: 2909 IRGMYKVD 2916>NP_001068567 Length = 358 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 V+G ++LDN Sbjct: 99 VKGAQELDN 107>NP_003717 Length = 359 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 V+G ++LDN Sbjct: 99 VKGAQELDN 107>NP_525023 Length = 1617 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 V+G+RK D Sbjct: 1381 VKGLRKAD 1388>XP_005257813 Length = 265 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 V+G ++LDN Sbjct: 5 VKGAQELDN 13>XP_005257814 Length = 265 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 V+G ++LDN Sbjct: 5 VKGAQELDN 13>XP_005257812 Length = 341 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 V+G ++LDN Sbjct: 99 VKGAQELDN 107>XP_006721856 Length = 1300 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 V+G+RK D Sbjct: 1064 VKGLRKAD 1071>XP_006721855 Length = 1551 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 V+G+RK D Sbjct: 1315 VKGLRKAD 1322>XP_006721854 Length = 1577 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 V+G+RK D Sbjct: 1341 VKGLRKAD 1348>XP_006721853 Length = 1617 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 V+G+RK D Sbjct: 1381 VKGLRKAD 1388>XP_006711794 Length = 3022 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 +RGM K+D Sbjct: 2130 IRGMYKVD 2137>XP_005273086 Length = 3264 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 +RGM K+D Sbjct: 2909 IRGMYKVD 2916>XP_005273085 Length = 3755 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 +RGM K+D Sbjct: 2863 IRGMYKVD 2870>XP_005273084 Length = 3801 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 +RGM K+D Sbjct: 2909 IRGMYKVD 2916>NP_619634 Length = 147 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VRGMRKL 7 +RGM+KL Sbjct: 135 IRGMQKL 141>NP_115495 Length = 6306 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 VRGMRKLD 8 +RG++K D Sbjct: 5099 IRGLQKFD 5106>NP_005989 Length = 545 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VRGMRKLDN 9 +R +RK DN Sbjct: 312 IRRVRKTDN 320>NP_001008800 Length = 507 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VRGMRKLDN 9 +R +RK DN Sbjct: 274 IRRVRKTDN 282>NP_055928 Length = 2961 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 GMRKLD 8 G+RKLD Sbjct: 1075 GLRKLD 1080>XP_005256618 Length = 2962 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 GMRKLD 8 G+RKLD Sbjct: 1076 GLRKLD 1081>XP_005256617 Length = 2966 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 GMRKLD 8 G+RKLD Sbjct: 1076 GLRKLD 1081>NP_001152967 Length = 97 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VRGMRKLDN 9 +RG +++DN Sbjct: 2 LRGTKEMDN 10Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.143 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 497,869 Number of extensions: 707 Number of successful extensions: 56 Number of sequences better than 10000.0: 56 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 56 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |