Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 20 509 NP_001263689 20 509 NP_001119584 20 509 NP_001119586 20 509 NP_001263625 20 509 NP_001119590 20 509 NP_001263690 20 509 NP_001119585 20 509 NP_001263624 20 509 NP_001119588 20 509 NP_001119587 20 509 NP_001119589 20 509 NP_001108451 17 3301 NP_001108454 17 3301 NP_003713 17 3301 NP_001108450 17 3301 NP_001108452 17 3301 NP_001108453 17 3301 NP_001191121 17 3301 NP_001119713 17 3301 NP_001191117 17 3301 NP_001119712 17 3301 NP_001119714 17 3301 NP_005418 17 3301 NP_001191116 17 3301 NP_001191115 17 3301 NP_001191119 17 3301 NP_001191113 17 3301 NP_001191118 17 3301 NP_001191120 17 3301 NP_001191114 17 3301 NP_612350 17 3301 NP_001180382 17 3301 NP_001180460 17 3301 XP_006719743 17 3301 XP_006719742 17 3301 XP_006719741 17 3301 XP_005254043 17 3301 XP_005254042 17 3301 XP_005247903 17 3301 XP_005247901 17 3301 XP_005247900 17 3301 NP_055448 17 3301 NP_001008844 16 7355 NP_004406 16 7355 NP_061923 16 7355 XP_005263135 16 7355 XP_005263134 16 7355 XP_006714303 16 7355 XP_005263133 16 7355 XP_005263132 16 7355 XP_005263131 16 7355 XP_005263130 16 7355 NP_061982 15 9605 NP_001013758 15 9605 XP_005255488 15 9605>NP_000537 Length = 393 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 157 VRAMAIYKQ 165>NP_001263689 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 118 VRAMAIYKQ 126>NP_001119584 Length = 393 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 157 VRAMAIYKQ 165>NP_001119586 Length = 341 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 157 VRAMAIYKQ 165>NP_001263625 Length = 302 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 118 VRAMAIYKQ 126>NP_001119590 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 118 VRAMAIYKQ 126>NP_001263690 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 118 VRAMAIYKQ 126>NP_001119585 Length = 346 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 157 VRAMAIYKQ 165>NP_001263624 Length = 307 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 118 VRAMAIYKQ 126>NP_001119588 Length = 209 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 25 VRAMAIYKQ 33>NP_001119587 Length = 261 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 25 VRAMAIYKQ 33>NP_001119589 Length = 214 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 VRAM IYKQ Sbjct: 25 VRAMAIYKQ 33>NP_001108451 Length = 487 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 225 IRAMPVYKK 233>NP_001108454 Length = 393 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 131 IRAMPVYKK 139>NP_003713 Length = 680 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 225 IRAMPVYKK 233>NP_001108450 Length = 555 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 225 IRAMPVYKK 233>NP_001108452 Length = 586 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 131 IRAMPVYKK 139>NP_001108453 Length = 461 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 131 IRAMPVYKK 139>NP_001191121 Length = 565 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 104 IRAMPVYKK 112>NP_001119713 Length = 450 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 126 IRAMPVYKK 134>NP_001191117 Length = 540 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 175 IRAMPVYKK 183>NP_001119712 Length = 587 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 126 IRAMPVYKK 134>NP_001119714 Length = 426 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 126 IRAMPVYKK 134>NP_005418 Length = 636 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 175 IRAMPVYKK 183>NP_001191116 Length = 555 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 175 IRAMPVYKK 183>NP_001191115 Length = 403 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 175 IRAMPVYKK 183>NP_001191119 Length = 506 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 126 IRAMPVYKK 134>NP_001191113 Length = 499 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 175 IRAMPVYKK 183>NP_001191118 Length = 354 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 126 IRAMPVYKK 134>NP_001191120 Length = 491 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 126 IRAMPVYKK 134>NP_001191114 Length = 475 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 175 IRAMPVYKK 183>NP_612350 Length = 245 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RA T+YK+ Sbjct: 108 IRAQTLYKK 116>NP_001180382 Length = 302 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RA T+YK+ Sbjct: 165 IRAQTLYKK 173>NP_001180460 Length = 337 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RA T+YK+ Sbjct: 200 IRAQTLYKK 208>XP_006719743 Length = 245 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RA T+YK+ Sbjct: 108 IRAQTLYKK 116>XP_006719742 Length = 336 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RA T+YK+ Sbjct: 199 IRAQTLYKK 207>XP_006719741 Length = 364 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RA T+YK+ Sbjct: 227 IRAQTLYKK 235>XP_005254043 Length = 371 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RA T+YK+ Sbjct: 234 IRAQTLYKK 242>XP_005254042 Length = 394 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RA T+YK+ Sbjct: 257 IRAQTLYKK 265>XP_005247903 Length = 483 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 225 IRAMPVYKK 233>XP_005247901 Length = 663 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 208 IRAMPVYKK 216>XP_005247900 Length = 676 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VRAMTIYKQ 9 +RAM +YK+ Sbjct: 225 IRAMPVYKK 233>NP_055448 Length = 1173 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RAMTIYKQ 9 RA+ IYKQ Sbjct: 631 RALAIYKQ 638>NP_001008844 Length = 2272 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VRAMTIYK 8 +RAMTI K Sbjct: 560 IRAMTIAK 567>NP_004406 Length = 2871 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VRAMTIYK 8 +RAMTI K Sbjct: 560 IRAMTIAK 567>NP_061923 Length = 1073 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AMTIYKQ 9 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263135 Length = 488 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AMTIYKQ 9 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263134 Length = 800 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AMTIYKQ 9 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_006714303 Length = 957 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AMTIYKQ 9 AMT+Y+Q Sbjct: 40 AMTLYEQ 46>XP_005263133 Length = 1022 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AMTIYKQ 9 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263132 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AMTIYKQ 9 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263131 Length = 1073 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AMTIYKQ 9 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>XP_005263130 Length = 1073 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AMTIYKQ 9 AMT+Y+Q Sbjct: 156 AMTLYEQ 162>NP_061982 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 VRAMTIY 7 +RA+T+Y Sbjct: 209 IRAVTVY 215>NP_001013758 Length = 1035 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 RAMTIYK 8 RAM +YK Sbjct: 1017 RAMQVYK 1023>XP_005255488 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 VRAMTIY 7 +RA+T+Y Sbjct: 209 IRAVTVY 215Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.132 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 325,000 Number of extensions: 322 Number of successful extensions: 56 Number of sequences better than 10000.0: 56 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 56 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |