Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1935 NP_001263689 18 1935 NP_001119584 18 1935 NP_001119586 18 1935 NP_001263625 18 1935 NP_001119590 18 1935 NP_001263690 18 1935 NP_001119585 18 1935 NP_001263624 18 1935 NP_001119588 18 1935 NP_001119587 18 1935 NP_001119589 18 1935 NP_031392 17 2528 NP_001007268 17 2528 NP_001182570 17 2528 XP_005246450 17 2528 XP_005246449 17 2528 NP_001005497 17 3301 NP_001005275 16 5631 NP_001001674 16 5631 NP_001004758 16 5631 NP_079042 15 9605 NP_085135 15 9605 NP_112155 15 9605 NP_001036048 15 9605 NP_001036050 15 9605 NP_001036049 15 9605 NP_001172043 15 9605 XP_005258413 15 9605>NP_000537 Length = 393 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 157 VRAMAIYKQ 165>NP_001263689 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 118 VRAMAIYKQ 126>NP_001119584 Length = 393 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 157 VRAMAIYKQ 165>NP_001119586 Length = 341 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 157 VRAMAIYKQ 165>NP_001263625 Length = 302 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 118 VRAMAIYKQ 126>NP_001119590 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 118 VRAMAIYKQ 126>NP_001263690 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 118 VRAMAIYKQ 126>NP_001119585 Length = 346 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 157 VRAMAIYKQ 165>NP_001263624 Length = 307 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 118 VRAMAIYKQ 126>NP_001119588 Length = 209 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 25 VRAMAIYKQ 33>NP_001119587 Length = 261 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 25 VRAMAIYKQ 33>NP_001119589 Length = 214 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VRAMAICKQ 9 VRAMAI KQ Sbjct: 25 VRAMAIYKQ 33>NP_031392 Length = 1463 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RAMAICKQ 9 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>NP_001007268 Length = 1324 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RAMAICKQ 9 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>NP_001182570 Length = 1461 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RAMAICKQ 9 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>XP_005246450 Length = 1461 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RAMAICKQ 9 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>XP_005246449 Length = 1463 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RAMAICKQ 9 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>NP_001005497 Length = 312 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RAMAICK 8 R MAICK Sbjct: 120 RCMAICK 126>NP_001005275 Length = 344 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RAMAICK 8 R MAICK Sbjct: 150 RYMAICK 156>NP_001001674 Length = 312 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RAMAICK 8 R MAICK Sbjct: 122 RYMAICK 128>NP_001004758 Length = 323 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 RAMAICK 8 RA+AIC+ Sbjct: 130 RALAICR 136>NP_079042 Length = 323 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 RAMAICK 8 RA+A+C+ Sbjct: 146 RALAVCE 152>NP_085135 Length = 2248 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 VRAMAICK 8 ++AM +CK Sbjct: 2217 LKAMIVCK 2224>NP_112155 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VRAMAICK 8 +RA ICK Sbjct: 163 IRAQNICK 170>NP_001036048 Length = 376 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VRAMAICK 8 +RA ICK Sbjct: 163 IRAQNICK 170>NP_001036050 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VRAMAICK 8 +RA ICK Sbjct: 163 IRAQNICK 170>NP_001036049 Length = 290 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VRAMAICK 8 +RA ICK Sbjct: 163 IRAQNICK 170>NP_001172043 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VRAMAICK 8 +RA ICK Sbjct: 64 IRAQNICK 71>XP_005258413 Length = 2249 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 VRAMAICK 8 ++AM +CK Sbjct: 2218 LKAMIVCK 2225Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.342 0.131 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 537,483 Number of extensions: 342 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |