Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001276866 19 869 NP_004439 19 869 NP_001276865 19 869 NP_001005862 19 869 XP_005257197 19 869 XP_006721828 19 869 NP_005219 18 1135 NP_001036064 18 1135 NP_005226 18 1135 XP_005246434 18 1135 XP_005246433 18 1135 XP_005246432 18 1135 XP_006712427 18 1135 NP_001192209 17 4312 NP_055928 16 5631 NP_004733 16 5631 NP_001028229 16 5631 NP_056335 16 5631 NP_065849 16 5631 XP_005256619 16 5631 XP_006721549 16 5631 XP_006721548 16 5631 XP_005256618 16 5631 XP_005256617 16 5631 XP_005265631 16 5631 XP_006713477 16 5631 XP_006713476 16 5631 XP_005265628 16 5631 XP_005265627 16 5631 XP_006713475 16 5631 XP_006713474 16 5631 XP_005265625 16 5631 XP_006713473 16 5631 XP_005265623 16 5631 XP_005265622 16 5631 XP_005265621 16 5631 XP_005265620 16 5631 XP_006713472 16 5631 XP_006713471 16 5631 XP_006713470 16 5631 NP_001978 16 7355 NP_000334 16 7355 NP_001243243 16 7355 NP_003032 16 7355 XP_006721136 16 7355 XP_006721135 16 7355 NP_001139749 15 9605 NP_001139748 15 9605 NP_065843 15 9605 NP_001139750 15 9605 NP_005019 15 9605 NP_002256 15 9605 NP_001263382 15 9605 NP_001106970 15 9605 NP_878250 15 9605 XP_006720131 15 9605 XP_006717513 15 9605 XP_005247729 15 9605>NP_001276866 Length = 1055 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 VQLV QLMP Sbjct: 794 VQLVTQLMP 802>NP_004439 Length = 1255 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 VQLV QLMP Sbjct: 794 VQLVTQLMP 802>NP_001276865 Length = 1240 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 VQLV QLMP Sbjct: 779 VQLVTQLMP 787>NP_001005862 Length = 1225 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 VQLV QLMP Sbjct: 764 VQLVTQLMP 772>XP_005257197 Length = 1225 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 VQLV QLMP Sbjct: 764 VQLVTQLMP 772>XP_006721828 Length = 1336 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 VQLV QLMP Sbjct: 875 VQLVTQLMP 883>NP_005219 Length = 1210 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 VQL+ QLMP Sbjct: 786 VQLITQLMP 794>NP_001036064 Length = 1292 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 +QLV QLMP Sbjct: 792 IQLVTQLMP 800>NP_005226 Length = 1308 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 +QLV QLMP Sbjct: 792 IQLVTQLMP 800>XP_005246434 Length = 1282 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 +QLV QLMP Sbjct: 782 IQLVTQLMP 790>XP_005246433 Length = 1298 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 +QLV QLMP Sbjct: 782 IQLVTQLMP 790>XP_005246432 Length = 1307 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 +QLV QLMP Sbjct: 807 IQLVTQLMP 815>XP_006712427 Length = 1323 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 +QLV QLMP Sbjct: 807 IQLVTQLMP 815>NP_001192209 Length = 192 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LVIQLMP 9 LV+QLMP Sbjct: 41 LVLQLMP 47>NP_055928 Length = 2961 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 QL+I+L+P Sbjct: 2142 QLIIRLLP 2149>NP_004733 Length = 1256 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 902 QLVVQLM 908>NP_001028229 Length = 1462 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 874 QLVVQLM 880>NP_056335 Length = 1287 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 902 QLVVQLM 908>NP_065849 Length = 1018 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VQLVIQLMP 9 VQL +QL+P Sbjct: 104 VQLGLQLLP 112>XP_005256619 Length = 1581 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 QL+I+L+P Sbjct: 758 QLIIRLLP 765>XP_006721549 Length = 1581 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 QL+I+L+P Sbjct: 758 QLIIRLLP 765>XP_006721548 Length = 1886 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 QL+I+L+P Sbjct: 1063 QLIIRLLP 1070>XP_005256618 Length = 2962 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 QL+I+L+P Sbjct: 2143 QLIIRLLP 2150>XP_005256617 Length = 2966 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 QL+I+L+P Sbjct: 2143 QLIIRLLP 2150>XP_005265631 Length = 1288 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 902 QLVVQLM 908>XP_006713477 Length = 1290 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 904 QLVVQLM 910>XP_006713476 Length = 1375 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 786 QLVVQLM 792>XP_005265628 Length = 1395 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 874 QLVVQLM 880>XP_005265627 Length = 1425 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 904 QLVVQLM 910>XP_006713475 Length = 1463 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 874 QLVVQLM 880>XP_006713474 Length = 1465 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 876 QLVVQLM 882>XP_005265625 Length = 1478 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 890 QLVVQLM 896>XP_006713473 Length = 1479 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 890 QLVVQLM 896>XP_005265623 Length = 1479 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 902 QLVVQLM 908>XP_005265622 Length = 1481 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 904 QLVVQLM 910>XP_005265621 Length = 1491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 902 QLVVQLM 908>XP_005265620 Length = 1492 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 904 QLVVQLM 910>XP_006713472 Length = 1492 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 903 QLVVQLM 909>XP_006713471 Length = 1492 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 903 QLVVQLM 909>XP_006713470 Length = 1493 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QLVIQLM 8 QLV+QLM Sbjct: 904 QLVVQLM 910>NP_001978 Length = 452 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VIQLMP 9 VIQLMP Sbjct: 265 VIQLMP 270>NP_000334 Length = 664 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LVIQLMP 9 LV++LMP Sbjct: 369 LVVELMP 375>NP_001243243 Length = 537 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LVIQLMP 9 LV++LMP Sbjct: 242 LVVELMP 248>NP_003032 Length = 672 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 +LV++LMP Sbjct: 368 RLVVKLMP 375>XP_006721136 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 +LV++LMP Sbjct: 356 RLVVKLMP 363>XP_006721135 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLVIQLMP 9 +LV++LMP Sbjct: 368 RLVVKLMP 375>NP_001139749 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QLVIQLMP 9 Q V+QL+P Sbjct: 198 QAVLQLLP 205>NP_001139748 Length = 448 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QLVIQLMP 9 Q V+QL+P Sbjct: 371 QAVLQLLP 378>NP_065843 Length = 440 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QLVIQLMP 9 Q V+QL+P Sbjct: 363 QAVLQLLP 370>NP_001139750 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QLVIQLMP 9 Q V+QL+P Sbjct: 198 QAVLQLLP 205>NP_005019 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VQLVIQLMP 9 VQ+ + LMP Sbjct: 55 VQIPVMLMP 63>NP_002256 Length = 876 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LVIQLMP 9 LVIQ MP Sbjct: 405 LVIQAMP 411>NP_001263382 Length = 731 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LVIQLMP 9 LVIQ MP Sbjct: 260 LVIQAMP 266>NP_001106970 Length = 956 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VQLVIQLMP 9 VQL++Q P Sbjct: 532 VQLIVQYPP 540>NP_878250 Length = 727 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VQLVIQLMP 9 VQL++Q P Sbjct: 303 VQLIVQYPP 311>XP_006720131 Length = 957 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VQLVIQLMP 9 VQL++Q P Sbjct: 533 VQLIVQYPP 541>XP_006717513 Length = 355 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VQLVIQLMP 9 VQ+ + LMP Sbjct: 55 VQIPVMLMP 63>XP_005247729 Length = 454 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QLVIQLMP 9 Q V+QL+P Sbjct: 377 QAVLQLLP 384Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.149 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 329,328 Number of extensions: 457 Number of successful extensions: 58 Number of sequences better than 10000.0: 58 Number of HSP's gapped: 58 Number of HSP's successfully gapped: 58 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |