Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_000205 17 4312 NP_005095 17 4312 NP_001186384 17 4312 NP_001106653 17 4312 NP_001136438 17 4312 NP_001186385 17 4312 XP_006722611 17 4312 XP_006722610 17 4312 NP_001277189 16 5631 NP_055968 16 5631 NP_001277188 16 5631 XP_005248759 16 5631 XP_006715489 16 5631 XP_005248758 16 5631 NP_005662 16 7355 NP_001269128 16 7355 NP_955450 16 7355 NP_004632 15 9605 NP_001182555 15 9605 NP_001271317 15 9605 NP_004732 15 9605 NP_001271318 15 9605 NP_477520 15 9605 NP_001139266 15 9605 NP_001273710 15 9605 NP_001273709 15 9605 NP_055309 15 9605 NP_001140166 15 9605 XP_006722792 15 9605 XP_006721103 15 9605 XP_005255314 15 9605 XP_006721102 15 9605 XP_005255313 15 9605 XP_005255312 15 9605 XP_006721101 15 9605 XP_005255311 15 9605 XP_005255310 15 9605 XP_005270330 15 9605 XP_005252668 15 9605 XP_006717572 15 9605 XP_005252667 15 9605 XP_005252666 15 9605 XP_005252665 15 9605 XP_005252663 15 9605 XP_005252662 15 9605 NP_001129973 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VQLNSVKS 8 VQLNSVKS Sbjct: 2918 VQLNSVKS 2925>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VQLNSVKS 8 VQLNSVKS Sbjct: 2713 VQLNSVKS 2720>NP_000205 Length = 1218 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QLNSVKSP 9 QLN +K+P Sbjct: 1118 QLNQIKNP 1125>NP_005095 Length = 801 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 QLNSVKSP 9 QLNS K P Sbjct: 746 QLNSTKKP 753>NP_001186384 Length = 836 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 QLNSVKSP 9 QLNS K P Sbjct: 781 QLNSTKKP 788>NP_001106653 Length = 801 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 QLNSVKSP 9 QLNS K P Sbjct: 746 QLNSTKKP 753>NP_001136438 Length = 1923 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LNSVKSP 9 LN+VKSP Sbjct: 1512 LNAVKSP 1518>NP_001186385 Length = 754 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 QLNSVKSP 9 QLNS K P Sbjct: 699 QLNSTKKP 706>XP_006722611 Length = 1034 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LNSVKSP 9 LN+VKSP Sbjct: 623 LNAVKSP 629>XP_006722610 Length = 1967 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LNSVKSP 9 LN+VKSP Sbjct: 1556 LNAVKSP 1562>NP_001277189 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VQLNSVKSP 9 V+ NSV+SP Sbjct: 118 VEENSVRSP 126>NP_055968 Length = 2039 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VQLNSVKSP 9 V+ NSV+SP Sbjct: 118 VEENSVRSP 126>NP_001277188 Length = 1951 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VQLNSVKSP 9 V+ NSV+SP Sbjct: 30 VEENSVRSP 38>XP_005248759 Length = 1951 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VQLNSVKSP 9 V+ NSV+SP Sbjct: 30 VEENSVRSP 38>XP_006715489 Length = 2039 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VQLNSVKSP 9 V+ NSV+SP Sbjct: 118 VEENSVRSP 126>XP_005248758 Length = 2039 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VQLNSVKSP 9 V+ NSV+SP Sbjct: 118 VEENSVRSP 126>NP_005662 Length = 270 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 59 LNSFKSP 65>NP_001269128 Length = 229 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 59 LNSFKSP 65>NP_955450 Length = 517 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 +QLN K+P Sbjct: 68 IQLNHYKTP 76>NP_004632 Length = 1027 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 825 LNSSKSP 831>NP_001182555 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 809 LNSSKSP 815>NP_001271317 Length = 709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VQLNSVK 7 VQ+NS+K Sbjct: 699 VQVNSIK 705>NP_004732 Length = 699 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VQLNSVK 7 VQ+NS+K Sbjct: 689 VQVNSIK 695>NP_001271318 Length = 700 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VQLNSVK 7 VQ+NS+K Sbjct: 690 VQVNSIK 696>NP_477520 Length = 488 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 VQLNS+ P Sbjct: 272 VQLNSMLCP 280>NP_001139266 Length = 489 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 VQLNS+ P Sbjct: 272 VQLNSMLCP 280>NP_001273710 Length = 411 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 VQLNS+ P Sbjct: 195 VQLNSMLCP 203>NP_001273709 Length = 411 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 VQLNS+ P Sbjct: 195 VQLNSMLCP 203>NP_055309 Length = 1962 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1523 MDMNSIKEP 1531>NP_001140166 Length = 1047 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QLNSVKSP 9 Q+NS+ SP Sbjct: 1010 QVNSLSSP 1017>XP_006722792 Length = 509 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + LN+VK P Sbjct: 375 MNLNNVKKP 383>XP_006721103 Length = 1597 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1491 MDMNSIKEP 1499>XP_005255314 Length = 1709 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1270 MDMNSIKEP 1278>XP_006721102 Length = 1820 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1381 MDMNSIKEP 1389>XP_005255313 Length = 1822 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1383 MDMNSIKEP 1391>XP_005255312 Length = 1871 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1432 MDMNSIKEP 1440>XP_006721101 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1468 MDMNSIKEP 1476>XP_005255311 Length = 1913 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1474 MDMNSIKEP 1482>XP_005255310 Length = 1919 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + +NS+K P Sbjct: 1480 MDMNSIKEP 1488>XP_005270330 Length = 710 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VQLNSVK 7 VQ+NS+K Sbjct: 700 VQVNSIK 706>XP_005252668 Length = 839 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 580 LNSSKSP 586>XP_006717572 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 825 LNSSKSP 831>XP_005252667 Length = 1052 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 793 LNSSKSP 799>XP_005252666 Length = 1057 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 798 LNSSKSP 804>XP_005252665 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 809 LNSSKSP 815>XP_005252663 Length = 1084 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 825 LNSSKSP 831>XP_005252662 Length = 1084 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LNSVKSP 9 LNS KSP Sbjct: 825 LNSSKSP 831>NP_001129973 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VQLNSVKSP 9 + LN+VK P Sbjct: 532 MNLNNVKKP 540Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.116 0.292 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 413,032 Number of extensions: 634 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |