Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 19 665 NP_001025035 17 3301 NP_663696 17 3301 NP_056164 16 7355 NP_653252 16 7355 NP_071733 16 7355 NP_778228 16 7355 XP_006720785 16 7355 XP_005274110 16 7355 XP_005252859 16 7355 XP_006718216 16 7355 XP_006718215 16 7355 XP_006718214 16 7355 XP_006718213 16 7355 XP_006718212 16 7355 XP_005251225 16 7355 XP_006716483 16 7355 XP_005251224 16 7355 XP_005249030 16 7355 XP_005249029 16 7355 NP_115821 16 7355 NP_703148 16 7355 NP_001161870 15 9605 NP_006407 15 9605 NP_078966 15 9605 NP_689777 15 9605 NP_060360 15 9605 NP_001252506 15 9605 NP_073567 15 9605 NP_056058 15 9605 NP_001269879 15 9605 NP_001269878 15 9605 NP_001251503 15 9605 NP_001242935 15 9605 NP_001139734 15 9605 NP_001139733 15 9605 NP_694994 15 9605 NP_001139736 15 9605 XP_005276776 15 9605 XP_005262564 15 9605 XP_006723004 15 9605 XP_005257134 15 9605 XP_006716574 15 9605 XP_006716573 15 9605 XP_005250858 15 9605 XP_005250857 15 9605 XP_006715622 15 9605 XP_005267190 15 9605 XP_005267189 15 9605 XP_005267187 15 9605 XP_005267185 15 9605 XP_005267184 15 9605 XP_006712756 15 9605 XP_006712755 15 9605 XP_006711326 15 9605 XP_005273145 15 9605 XP_006711325 15 9605 XP_006710324 15 9605 NP_009055 15 9605>NP_115803 Length = 1156 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VPSLSTAVQ 9 +PSLSTAVQ Sbjct: 857 MPSLSTAVQ 865>NP_001025035 Length = 1200 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSLSTAVQ 9 PSL TA+Q Sbjct: 4 PSLDTAIQ 11>NP_663696 Length = 615 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLSTA Sbjct: 558 VPSLSTA 564>NP_056164 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSLSTAVQ 9 PSL +AVQ Sbjct: 551 PSLGSAVQ 558>NP_653252 Length = 1463 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VP+LSTA Sbjct: 818 VPALSTA 824>NP_071733 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 PSLSTAV 8 PSLSTA+ Sbjct: 186 PSLSTAL 192>NP_778228 Length = 1121 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 852 VPSLSTS 858>XP_006720785 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 1013 VPSLSTS 1019>XP_005274110 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 PSLSTAV 8 PSLSTA+ Sbjct: 186 PSLSTAL 192>XP_005252859 Length = 1272 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 852 VPSLSTS 858>XP_006718216 Length = 1298 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 852 VPSLSTS 858>XP_006718215 Length = 1325 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 879 VPSLSTS 885>XP_006718214 Length = 1338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 892 VPSLSTS 898>XP_006718213 Length = 1339 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 919 VPSLSTS 925>XP_006718212 Length = 1365 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 919 VPSLSTS 925>XP_005251225 Length = 848 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VP+LSTA Sbjct: 203 VPALSTA 209>XP_006716483 Length = 1367 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VP+LSTA Sbjct: 722 VPALSTA 728>XP_005251224 Length = 1439 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VP+LSTA Sbjct: 794 VPALSTA 800>XP_005249030 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSLSTAVQ 9 PSL +AVQ Sbjct: 551 PSLGSAVQ 558>XP_005249029 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSLSTAVQ 9 PSL +AVQ Sbjct: 551 PSLGSAVQ 558>NP_115821 Length = 1044 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPSLSTA 7 VPSLST+ Sbjct: 978 VPSLSTS 984>NP_703148 Length = 1200 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 VP +S AVQ Sbjct: 168 VPGISQAVQ 176>NP_001161870 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 VPSL AVQ Sbjct: 93 VPSLVYAVQ 101>NP_006407 Length = 337 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 VPSL AVQ Sbjct: 93 VPSLVYAVQ 101>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VPSLST 6 VPSLST Sbjct: 10416 VPSLST 10421>NP_689777 Length = 3997 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 +PS STA+ Sbjct: 760 IPSFSTAL 767>NP_060360 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 +PS STA+ Sbjct: 760 IPSFSTAL 767>NP_001252506 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 VP L+ AVQ Sbjct: 238 VPGLTQAVQ 246>NP_073567 Length = 264 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 +P LSTA Q Sbjct: 85 LPELSTAQQ 93>NP_056058 Length = 863 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 +PS STA+ Sbjct: 760 IPSFSTAL 767>NP_001269879 Length = 273 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 +P LSTA Q Sbjct: 85 LPELSTAQQ 93>NP_001269878 Length = 230 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 +P LSTA Q Sbjct: 51 LPELSTAQQ 59>NP_001251503 Length = 833 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 VP L+ AVQ Sbjct: 238 VPGLTQAVQ 246>NP_001242935 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VPS STAV Sbjct: 189 VPSDSTAV 196>NP_001139734 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VPS STAV Sbjct: 227 VPSDSTAV 234>NP_001139733 Length = 619 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VPS STAV Sbjct: 272 VPSDSTAV 279>NP_694994 Length = 555 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VPS STAV Sbjct: 227 VPSDSTAV 234>NP_001139736 Length = 600 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VPS STAV Sbjct: 272 VPSDSTAV 279>XP_005276776 Length = 991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 +PS+ST Q Sbjct: 667 IPSMSTIYQ 675>XP_005262564 Length = 991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 +PS+ST Q Sbjct: 667 IPSMSTIYQ 675>XP_006723004 Length = 6443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VPSLST 6 VPSLST Sbjct: 2330 VPSLST 2335>XP_005257134 Length = 842 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 VP L+ AVQ Sbjct: 247 VPGLTQAVQ 255>XP_006716574 Length = 968 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 +PS STA+ Sbjct: 760 IPSFSTAL 767>XP_006716573 Length = 1776 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 +PS STA+ Sbjct: 760 IPSFSTAL 767>XP_005250858 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 +PS STA+ Sbjct: 760 IPSFSTAL 767>XP_005250857 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 +PS STA+ Sbjct: 760 IPSFSTAL 767>XP_006715622 Length = 2499 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VP L+TA+ Sbjct: 958 VPELNTAI 965>XP_005267190 Length = 3424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VP L+TA+ Sbjct: 1883 VPELNTAI 1890>XP_005267189 Length = 3425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VP L+TA+ Sbjct: 1897 VPELNTAI 1904>XP_005267187 Length = 3433 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VP L+TA+ Sbjct: 1892 VPELNTAI 1899>XP_005267185 Length = 3437 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VP L+TA+ Sbjct: 1896 VPELNTAI 1903>XP_005267184 Length = 3438 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VP L+TA+ Sbjct: 1897 VPELNTAI 1904>XP_006712756 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 +P LSTA Q Sbjct: 85 LPELSTAQQ 93>XP_006712755 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 +P LSTA Q Sbjct: 85 LPELSTAQQ 93>XP_006711326 Length = 694 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VPS STAV Sbjct: 517 VPSDSTAV 524>XP_005273145 Length = 845 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VPS STAV Sbjct: 517 VPSDSTAV 524>XP_006711325 Length = 864 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VPS STAV Sbjct: 517 VPSDSTAV 524>XP_006710324 Length = 943 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VPSLSTAVQ 9 +PS+ST Q Sbjct: 619 IPSMSTIYQ 627>NP_009055 Length = 3433 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPSLSTAV 8 VP L+TA+ Sbjct: 1892 VPELNTAI 1899Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.112 0.275 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 489,987 Number of extensions: 661 Number of successful extensions: 59 Number of sequences better than 10000.0: 59 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 59 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |