Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006197 18 1482 XP_006714104 18 1482 XP_005265800 18 1482 XP_006714103 18 1482 XP_006714102 18 1482 NP_000531 17 2528 NP_001036188 17 2528 XP_006723382 17 2528 XP_006723381 17 2528 XP_006723380 17 2528 NP_060485 17 3301 NP_001171711 17 3301 NP_849157 17 4312 NP_722576 17 4312 XP_005262424 17 4312 XP_006714159 17 4312 XP_006714158 17 4312 XP_006714157 17 4312 NP_071414 17 4312 NP_001177344 16 5631 NP_647476 16 5631 NP_005632 16 5631 XP_005276286 16 5631 XP_005277590 16 5631 XP_006716165 16 5631 XP_006716164 16 5631 XP_006716163 16 5631 XP_005265698 16 5631 XP_005276004 16 5631 NP_056280 16 7355 NP_001239085 16 7355 NP_006423 15 9605 NP_733779 15 9605 NP_037524 15 9605 NP_008861 15 9605 NP_112153 15 9605 XP_006720067 15 9605 XP_005264331 15 9605>NP_006197 Length = 1089 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VPSIKLV T Sbjct: 266 VPSIKLVYT 274>XP_006714104 Length = 832 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VPSIKLV T Sbjct: 291 VPSIKLVYT 299>XP_005265800 Length = 1089 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VPSIKLV T Sbjct: 266 VPSIKLVYT 274>XP_006714103 Length = 1111 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VPSIKLV T Sbjct: 288 VPSIKLVYT 296>XP_006714102 Length = 1114 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VPSIKLV T Sbjct: 291 VPSIKLVYT 299>NP_000531 Length = 5038 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VP +KLVST Sbjct: 1839 VPVLKLVST 1847>NP_001036188 Length = 5033 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VP +KLVST Sbjct: 1839 VPVLKLVST 1847>XP_006723382 Length = 5027 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VP +KLVST Sbjct: 1839 VPVLKLVST 1847>XP_006723381 Length = 5031 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VP +KLVST Sbjct: 1838 VPVLKLVST 1846>XP_006723380 Length = 5032 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VP +KLVST Sbjct: 1839 VPVLKLVST 1847>NP_060485 Length = 855 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P IKL+ST Sbjct: 318 PQIKLIST 325>NP_001171711 Length = 758 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P IKL+ST Sbjct: 318 PQIKLIST 325>NP_849157 Length = 1077 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 V S+KLVST Sbjct: 866 VHSVKLVST 874>NP_722576 Length = 3080 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VPS+ ++ST Sbjct: 783 VPSVDIIST 791>XP_005262424 Length = 2875 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 VPS+ ++ST Sbjct: 578 VPSVDIIST 586>XP_006714159 Length = 1077 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 V S+KLVST Sbjct: 866 VHSVKLVST 874>XP_006714158 Length = 1077 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 V S+KLVST Sbjct: 866 VHSVKLVST 874>XP_006714157 Length = 1077 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 V S+KLVST Sbjct: 866 VHSVKLVST 874>NP_071414 Length = 955 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P IK+VST Sbjct: 660 PDIKIVST 667>NP_001177344 Length = 714 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P +KLVST Sbjct: 617 PIVKLVST 624>NP_647476 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P +KLVST Sbjct: 580 PIVKLVST 587>NP_005632 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P +KLVST Sbjct: 580 PIVKLVST 587>XP_005276286 Length = 642 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 +P I++VST Sbjct: 480 IPGIQIVST 488>XP_005277590 Length = 900 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 +P I++VST Sbjct: 787 IPGIQIVST 795>XP_006716165 Length = 667 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P +KLVST Sbjct: 570 PIVKLVST 577>XP_006716164 Length = 667 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P +KLVST Sbjct: 570 PIVKLVST 577>XP_006716163 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 P +KLVST Sbjct: 580 PIVKLVST 587>XP_005265698 Length = 577 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 +P I++VST Sbjct: 464 IPGIQIVST 472>XP_005276004 Length = 584 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 +P I++VST Sbjct: 471 IPGIQIVST 479>NP_056280 Length = 1508 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 +P++KL+ T Sbjct: 565 IPNLKLICT 573>NP_001239085 Length = 1507 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 +P++KL+ T Sbjct: 564 IPNLKLICT 572>NP_006423 Length = 151 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 PSIKLV 7 PSIKLV Sbjct: 120 PSIKLV 125>NP_733779 Length = 163 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 +PSIKL S+ Sbjct: 1 MPSIKLQSS 9>NP_037524 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VPSIKLVS 8 VPS+KL++ Sbjct: 330 VPSLKLLA 337>NP_008861 Length = 160 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VPSIKLVST 9 +PSIKL S+ Sbjct: 1 MPSIKLQSS 9>NP_112153 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PSIKLVST 9 PS+ LVST Sbjct: 9 PSLLLVST 16>XP_006720067 Length = 174 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 PSIKLV 7 PSIKLV Sbjct: 120 PSIKLV 125>XP_005264331 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VPSIKLVS 8 VPS+KL++ Sbjct: 330 VPSLKLLA 337Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.126 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 508,098 Number of extensions: 711 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |