Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 18 1135 NP_444254 18 1135 NP_444253 18 1135 NP_444255 18 1135 XP_005247551 18 1135 XP_005247550 18 1135 XP_006713712 18 1135 XP_005247549 18 1135 NP_004225 16 5631 NP_001020279 16 5631 NP_002276 16 5631 XP_005259469 16 5631 XP_005264000 16 5631 XP_006712586 16 5631 XP_005263999 16 5631 NP_001273661 16 7355 NP_078995 16 7355 NP_001273662 16 7355 XP_006720043 16 7355 NP_079223 15 9605 XP_005269164 15 9605 XP_006713820 15 9605 XP_005247850 15 9605 XP_005247848 15 9605 XP_006713819 15 9605 XP_005247847 15 9605 XP_006713818 15 9605 XP_006713817 15 9605 XP_006713816 15 9605 XP_005247846 15 9605>NP_444256 Length = 1794 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPLQQSARV 9 VPLQ SARV Sbjct: 199 VPLQPSARV 207>NP_444254 Length = 1845 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPLQQSARV 9 VPLQ SARV Sbjct: 199 VPLQPSARV 207>NP_444253 Length = 1914 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPLQQSARV 9 VPLQ SARV Sbjct: 199 VPLQPSARV 207>NP_444255 Length = 1863 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPLQQSARV 9 VPLQ SARV Sbjct: 199 VPLQPSARV 207>XP_005247551 Length = 1855 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPLQQSARV 9 VPLQ SARV Sbjct: 209 VPLQPSARV 217>XP_005247550 Length = 1856 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPLQQSARV 9 VPLQ SARV Sbjct: 209 VPLQPSARV 217>XP_006713712 Length = 1923 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPLQQSARV 9 VPLQ SARV Sbjct: 209 VPLQPSARV 217>XP_005247549 Length = 1924 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPLQQSARV 9 VPLQ SARV Sbjct: 209 VPLQPSARV 217>NP_004225 Length = 738 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPLQQSAR 8 +P+QQS R Sbjct: 306 IPVQQSVR 313>NP_001020279 Length = 1251 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VPLQQSAR 8 VP+QQS R Sbjct: 161 VPVQQSKR 168>NP_002276 Length = 1226 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VPLQQSAR 8 VP+QQS R Sbjct: 136 VPVQQSKR 143>XP_005259469 Length = 734 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPLQQSAR 8 +P+QQS R Sbjct: 302 IPVQQSVR 309>XP_005264000 Length = 1226 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VPLQQSAR 8 VP+QQS R Sbjct: 136 VPVQQSKR 143>XP_006712586 Length = 1262 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VPLQQSAR 8 VP+QQS R Sbjct: 188 VPVQQSKR 195>XP_005263999 Length = 1278 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VPLQQSAR 8 VP+QQS R Sbjct: 188 VPVQQSKR 195>NP_001273661 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPLQQSARV 9 VPL+ ARV Sbjct: 69 VPLEHRARV 77>NP_078995 Length = 336 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPLQQSARV 9 VPL+ ARV Sbjct: 69 VPLEHRARV 77>NP_001273662 Length = 236 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPLQQSARV 9 VPL+ ARV Sbjct: 69 VPLEHRARV 77>XP_006720043 Length = 190 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPLQQSARV 9 VPL+ ARV Sbjct: 69 VPLEHRARV 77>NP_079223 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 480 PVQQSALV 487>XP_005269164 Length = 598 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PLQQSARV 9 PL Q ARV Sbjct: 8 PLHQRARV 15>XP_006713820 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 480 PVQQSALV 487>XP_005247850 Length = 614 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 480 PVQQSALV 487>XP_005247848 Length = 897 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 480 PVQQSALV 487>XP_006713819 Length = 925 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 394 PVQQSALV 401>XP_005247847 Length = 983 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 468 PVQQSALV 475>XP_006713818 Length = 999 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 468 PVQQSALV 475>XP_006713817 Length = 999 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 468 PVQQSALV 475>XP_006713816 Length = 999 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 468 PVQQSALV 475>XP_005247846 Length = 1011 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQQSARV 9 P+QQSA V Sbjct: 480 PVQQSALV 487Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 445,439 Number of extensions: 421 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |