Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005179 20 509 NP_002935 17 2528 XP_006715611 17 2528 NP_000426 16 5631 NP_722575 16 5631 NP_620130 16 5631 XP_005259981 16 5631 XP_006719005 16 5631 XP_005271789 16 5631 XP_005271787 16 5631 XP_005271786 16 5631 XP_005271785 16 5631 XP_005271784 16 5631 XP_005247180 16 5631 NP_112181 16 7355 NP_060417 15 9605>NP_005179 Length = 906 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VPAMLARRT 9 VPA+LARRT Sbjct: 781 VPAVLARRT 789>NP_002935 Length = 2347 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPAMLARRT 9 VPAMLA +T Sbjct: 1376 VPAMLAGKT 1384>XP_006715611 Length = 2342 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VPAMLARRT 9 VPAMLA +T Sbjct: 1371 VPAMLAGKT 1379>NP_000426 Length = 2321 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPAMLAR 7 VPA+LAR Sbjct: 1504 VPALLAR 1510>NP_722575 Length = 346 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VPAMLARRT 9 VPA L+R+T Sbjct: 311 VPAHLSRKT 319>NP_620130 Length = 664 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAMLARRT 9 VP ML RR+ Sbjct: 270 VPVMLPRRS 278>XP_005259981 Length = 2269 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPAMLAR 7 VPA+LAR Sbjct: 1452 VPALLAR 1458>XP_006719005 Length = 348 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAMLARRT 9 VP ML RR+ Sbjct: 273 VPVMLPRRS 281>XP_005271789 Length = 349 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAMLARRT 9 VP ML RR+ Sbjct: 273 VPVMLPRRS 281>XP_005271787 Length = 412 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAMLARRT 9 VP ML RR+ Sbjct: 18 VPVMLPRRS 26>XP_005271786 Length = 527 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAMLARRT 9 VP ML RR+ Sbjct: 133 VPVMLPRRS 141>XP_005271785 Length = 527 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAMLARRT 9 VP ML RR+ Sbjct: 133 VPVMLPRRS 141>XP_005271784 Length = 667 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAMLARRT 9 VP ML RR+ Sbjct: 273 VPVMLPRRS 281>XP_005247180 Length = 207 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VPAMLARRT 9 VPA L+R+T Sbjct: 172 VPAHLSRKT 180>NP_112181 Length = 615 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMLARRT 9 AML+RRT Sbjct: 577 AMLSRRT 583>NP_060417 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VPAMLARRT 9 +PA++ RR+ Sbjct: 520 IPAVMGRRS 528Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 398,558 Number of extensions: 613 Number of successful extensions: 16 Number of sequences better than 10000.0: 16 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 16 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |