Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_004817 16 5631 NP_001277716 16 5631 XP_003960172 16 5631 XP_003119008 16 5631 XP_003119853 16 5631 NP_079350 16 7355 NP_001093591 16 7355 NP_001093590 16 7355 NP_060729 16 7355 NP_060362 16 7355 XP_003960128 16 7355 XP_006720541 16 7355 XP_005254378 16 7355 XP_005254377 16 7355 XP_005253074 16 7355 XP_006718326 16 7355 XP_005253073 16 7355 XP_006714380 16 7355 XP_006714379 16 7355 XP_006714378 16 7355 XP_006714377 16 7355 XP_005246736 16 7355 XP_005246735 16 7355 XP_005246734 16 7355 XP_005246733 16 7355 NP_001032401 16 7355 NP_055508 16 7355 NP_954980 16 7355 NP_000283 15 9605 NP_061135 15 9605 XP_006724561 15 9605 XP_005274607 15 9605 XP_005274605 15 9605 XP_006724560 15 9605 XP_006724559 15 9605 XP_006715571 15 9605 XP_005246783 15 9605 NP_065994 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VNLANITIS 9 V+LANITIS Sbjct: 2456 VDLANITIS 2464>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VNLANITIS 9 V+LANITIS Sbjct: 2251 VDLANITIS 2259>NP_004817 Length = 775 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LANITIS 9 LANIT+S Sbjct: 320 LANITVS 326>NP_001277716 Length = 773 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LANITIS 9 LANIT+S Sbjct: 320 LANITVS 326>XP_003960172 Length = 459 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 NLANIT S Sbjct: 389 NLANITDS 396>XP_003119008 Length = 459 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 NLANIT S Sbjct: 389 NLANITDS 396>XP_003119853 Length = 459 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 NLANIT S Sbjct: 389 NLANITDS 396>NP_079350 Length = 4012 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+A ITIS Sbjct: 3027 NMATITIS 3034>NP_001093591 Length = 765 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VNLANITI 8 + LANIT+ Sbjct: 307 IQLANITV 314>NP_001093590 Length = 811 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VNLANITI 8 + LANIT+ Sbjct: 353 IQLANITV 360>NP_060729 Length = 1141 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VNLANITI 8 VNLAN+ I Sbjct: 659 VNLANLLI 666>NP_060362 Length = 930 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+AN+T S Sbjct: 513 NMANVTYS 520>XP_003960128 Length = 160 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 NLANITIS 9 NL+N+TI+ Sbjct: 41 NLSNLTIN 48>XP_006720541 Length = 123 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 NLANITIS 9 NLA++T+S Sbjct: 13 NLASVTLS 20>XP_005254378 Length = 140 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 NLANITIS 9 NLA++T+S Sbjct: 30 NLASVTLS 37>XP_005254377 Length = 231 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 NLANITIS 9 NLA++T+S Sbjct: 121 NLASVTLS 128>XP_005253074 Length = 956 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VNLANITI 8 VNLAN+ I Sbjct: 659 VNLANLLI 666>XP_006718326 Length = 968 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VNLANITI 8 VNLAN+ I Sbjct: 429 VNLANLLI 436>XP_005253073 Length = 1198 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VNLANITI 8 VNLAN+ I Sbjct: 659 VNLANLLI 666>XP_006714380 Length = 3897 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+A ITIS Sbjct: 2912 NMATITIS 2919>XP_006714379 Length = 3936 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+A ITIS Sbjct: 2951 NMATITIS 2958>XP_006714378 Length = 3965 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+A ITIS Sbjct: 2980 NMATITIS 2987>XP_006714377 Length = 4010 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+A ITIS Sbjct: 3025 NMATITIS 3032>XP_005246736 Length = 976 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+AN+T S Sbjct: 555 NMANVTYS 562>XP_005246735 Length = 976 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+AN+T S Sbjct: 555 NMANVTYS 562>XP_005246734 Length = 934 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+AN+T S Sbjct: 513 NMANVTYS 520>XP_005246733 Length = 972 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NLANITIS 9 N+AN+T S Sbjct: 555 NMANVTYS 562>NP_001032401 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VNLANITI 8 + LANIT+ Sbjct: 278 IQLANITV 285>NP_055508 Length = 883 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VNLANITI 8 + LANIT+ Sbjct: 425 IQLANITV 432>NP_954980 Length = 159 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 NLANITIS 9 NL+N+TI+ Sbjct: 40 NLSNLTIN 47>NP_000283 Length = 1235 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VNLANIT 7 VNL N+T Sbjct: 273 VNLVNVT 279>NP_061135 Length = 648 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VNLANIT 7 VNL NIT Sbjct: 385 VNLKNIT 391>XP_006724561 Length = 1061 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VNLANIT 7 VNL N+T Sbjct: 91 VNLVNVT 97>XP_005274607 Length = 1207 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VNLANIT 7 VNL N+T Sbjct: 273 VNLVNVT 279>XP_005274605 Length = 1217 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VNLANIT 7 VNL N+T Sbjct: 273 VNLVNVT 279>XP_006724560 Length = 1225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VNLANIT 7 VNL N+T Sbjct: 273 VNLVNVT 279>XP_006724559 Length = 1243 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 VNLANIT 7 VNL N+T Sbjct: 273 VNLVNVT 279>XP_006715571 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VNLANIT 7 VNL NIT Sbjct: 365 VNLKNIT 371>XP_005246783 Length = 908 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VNLANITI 8 VN++NI+I Sbjct: 173 VNISNISI 180>NP_065994 Length = 908 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VNLANITI 8 VN++NI+I Sbjct: 173 VNISNISI 180Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.127 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 300,004 Number of extensions: 388 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |