Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000312 20 390 NP_066000 17 3301 XP_006713781 17 3301 NP_001278417 15 9605 NP_001278418 15 9605 NP_689567 15 9605 NP_001013725 15 9605 NP_001171134 15 9605 NP_060621 15 9605 NP_001171136 15 9605 NP_001073920 15 9605 XP_006723201 15 9605 XP_005254450 15 9605 XP_005254449 15 9605 XP_006720168 15 9605 XP_006717206 15 9605 XP_005252108 15 9605 XP_006712674 15 9605 XP_006712673 15 9605 XP_006712672 15 9605 XP_005246722 15 9605 NP_001171135 15 9605 NP_005383 15 9605>NP_000312 Length = 928 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VLNVLNLKA 9 +LNVLNLKA Sbjct: 517 ILNVLNLKA 525>NP_066000 Length = 771 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VLNVLNL 7 VLNVLNL Sbjct: 216 VLNVLNL 222>XP_006713781 Length = 771 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 VLNVLNL 7 VLNVLNL Sbjct: 216 VLNVLNL 222>NP_001278417 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVLNLKA 9 N+LNL+A Sbjct: 61 NILNLQA 67>NP_001278418 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVLNLKA 9 N+LNL+A Sbjct: 54 NILNLQA 60>NP_689567 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVLNLKA 9 N+LNL+A Sbjct: 54 NILNLQA 60>NP_001013725 Length = 1649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NVLNLK 8 N+LNLK Sbjct: 1130 NILNLK 1135>NP_001171134 Length = 2446 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLNVLNLKA 9 VLNV+N A Sbjct: 628 VLNVINQNA 636>NP_060621 Length = 2472 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLNVLNLKA 9 VLNV+N A Sbjct: 628 VLNVINQNA 636>NP_001171136 Length = 2446 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLNVLNLKA 9 VLNV+N A Sbjct: 628 VLNVINQNA 636>NP_001073920 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVLNLKA 9 N+LNL+A Sbjct: 334 NILNLEA 340>XP_006723201 Length = 554 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVLNLKA 9 N+LNL+A Sbjct: 18 NILNLQA 24>XP_005254450 Length = 1505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NVLNLK 8 N+LNLK Sbjct: 1130 NILNLK 1135>XP_005254449 Length = 1626 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NVLNLK 8 N+LNLK Sbjct: 1130 NILNLK 1135>XP_006720168 Length = 218 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVLNLKA 9 N+LNL+A Sbjct: 130 NILNLEA 136>XP_006717206 Length = 1062 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLNVLNLK 8 VLNV NL+ Sbjct: 189 VLNVTNLE 196>XP_005252108 Length = 1097 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLNVLNLK 8 VLNV NL+ Sbjct: 189 VLNVTNLE 196>XP_006712674 Length = 2436 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLNVLNLKA 9 VLNV+N A Sbjct: 592 VLNVINQNA 600>XP_006712673 Length = 2441 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLNVLNLKA 9 VLNV+N A Sbjct: 597 VLNVINQNA 605>XP_006712672 Length = 2443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLNVLNLKA 9 VLNV+N A Sbjct: 599 VLNVINQNA 607>XP_005246722 Length = 2472 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLNVLNLKA 9 VLNV+N A Sbjct: 628 VLNVINQNA 636>NP_001171135 Length = 2446 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLNVLNLKA 9 VLNV+N A Sbjct: 628 VLNVINQNA 636>NP_005383 Length = 1096 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLNVLNLK 8 VLNV NL+ Sbjct: 189 VLNVTNLE 196Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.138 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 378,147 Number of extensions: 481 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |