Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1935 NP_060862 17 3301 XP_005263172 17 3301 NP_689777 16 5631 NP_060360 16 5631 XP_006716573 16 5631 XP_005250858 16 5631 XP_005250857 16 5631 XP_006716107 16 5631 NP_036270 16 7355 NP_001139138 16 7355 NP_001139139 16 7355 NP_036333 16 7355 NP_065974 16 7355 NP_001272478 16 7355 NP_115548 16 7355 XP_005249939 16 7355 XP_006715854 16 7355 XP_006715853 16 7355 XP_006712720 16 7355 XP_006712719 16 7355 XP_005246770 16 7355 XP_005246768 16 7355 XP_005246769 16 7355 NP_000516 15 9605 NP_001159762 15 9605 NP_001273001 15 9605 NP_001123551 15 9605 NP_000443 15 9605 NP_001074003 15 9605 NP_066014 15 9605 NP_665879 15 9605 XP_005254452 15 9605 XP_005254451 15 9605 XP_006718289 15 9605 XP_005270926 15 9605 XP_005270927 15 9605 XP_005270925 15 9605 NP_057200 15 9605>NP_004295 Length = 1620 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKVGSVRK 9 VLK GSVRK Sbjct: 126 VLKGGSVRK 134>NP_060862 Length = 2104 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LKVGSVRK 9 ++VGSVRK Sbjct: 1717 IRVGSVRK 1724>XP_005263172 Length = 2104 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LKVGSVRK 9 ++VGSVRK Sbjct: 1717 IRVGSVRK 1724>NP_689777 Length = 3997 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VLKVGSV 7 VLK+GSV Sbjct: 1555 VLKIGSV 1561>NP_060360 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VLKVGSV 7 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_006716573 Length = 1776 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VLKVGSV 7 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_005250858 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VLKVGSV 7 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_005250857 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VLKVGSV 7 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_006716107 Length = 579 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLKVGSVRK 9 V K+GSVR+ Sbjct: 564 VRKIGSVRE 572>NP_036270 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKVGSVRK 9 L VGS+RK Sbjct: 51 LVVGSIRK 58>NP_001139138 Length = 1192 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 +LK GS+R Sbjct: 236 ILKCGSIR 243>NP_001139139 Length = 1179 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 +LK GS+R Sbjct: 247 ILKCGSIR 254>NP_036333 Length = 1203 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 +LK GS+R Sbjct: 247 ILKCGSIR 254>NP_065974 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>NP_001272478 Length = 2352 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 1790 VLKVDSVR 1797>NP_115548 Length = 1316 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KVGSVRK 9 K+GS+RK Sbjct: 941 KIGSLRK 947>XP_005249939 Length = 1324 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KVGSVRK 9 K+GS+RK Sbjct: 941 KIGSLRK 947>XP_006715854 Length = 1327 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KVGSVRK 9 K+GS+RK Sbjct: 941 KIGSLRK 947>XP_006715853 Length = 1327 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KVGSVRK 9 K+GS+RK Sbjct: 941 KIGSLRK 947>XP_006712720 Length = 1991 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>XP_006712719 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>XP_005246770 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>XP_005246768 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>XP_005246769 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>NP_000516 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VLKVGSVRK 9 +L+VG +RK Sbjct: 199 MLRVGDLRK 207>NP_001159762 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VLKVGSVRK 9 +L+VG +RK Sbjct: 112 MLRVGDLRK 120>NP_001273001 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKVGSVRK 9 LKVGSV + Sbjct: 804 LKVGSVEE 811>NP_001123551 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKVGSVRK 9 LKVGSV + Sbjct: 860 LKVGSVEE 867>NP_000443 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 VLKVGSV 7 +LK+GS+ Sbjct: 193 ILKIGSI 199>NP_001074003 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKVGSVRK 9 LK+G++RK Sbjct: 176 LKLGALRK 183>NP_066014 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKVGSVRK 9 LKVGSV + Sbjct: 860 LKVGSVEE 867>NP_665879 Length = 349 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 292 VLKVTSVR 299>XP_005254452 Length = 2188 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKVGSVRK 9 LK+G++RK Sbjct: 176 LKLGALRK 183>XP_005254451 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKVGSVRK 9 LK+G++RK Sbjct: 176 LKLGALRK 183>XP_006718289 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VLKVGSVRK 9 +L+VG +RK Sbjct: 112 MLRVGDLRK 120>XP_005270926 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKVGSVRK 9 LKVGSV + Sbjct: 804 LKVGSVEE 811>XP_005270927 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKVGSVRK 9 LKVGSV + Sbjct: 804 LKVGSVEE 811>XP_005270925 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKVGSVRK 9 LKVGSV + Sbjct: 860 LKVGSVEE 867>NP_057200 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VLKVGSVR 8 VLKV SVR Sbjct: 292 VLKVTSVR 299Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.138 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 388,228 Number of extensions: 370 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |