Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001185761 18 1135 NP_001185763 18 1135 NP_055459 18 1135 XP_006726436 18 1135 XP_006726410 18 1135 XP_006711784 18 1135 XP_006711719 18 1135 XP_006711718 18 1135 XP_006711717 18 1135 XP_006711716 18 1135 XP_006711715 18 1135 XP_006711714 18 1135 XP_006711713 18 1135 XP_006711712 18 1135 XP_006711711 18 1135 XP_006711710 18 1135 XP_006711709 18 1135 XP_005277503 18 1135 XP_005273038 18 1135 XP_006711708 18 1135 XP_005277500 18 1135 XP_006711707 18 1135 XP_005277499 18 1135 XP_006711706 18 1135 XP_006711705 18 1135 XP_006711164 18 1135 XP_005276114 18 1135 XP_006710122 18 1135 NP_006209 17 3301 XP_006713721 17 3301 XP_006723210 17 4312 NP_037366 17 4312 NP_001248344 16 7355 NP_694534 16 7355 NP_008871 16 7355 NP_821078 16 7355 NP_001248343 16 7355 XP_006719213 16 7355 XP_006719212 16 7355 NP_001244068 15 9605 NP_000076 15 9605 NP_001159417 15 9605 NP_001008781 15 9605 NP_001254 15 9605 NP_004061 15 9605 XP_005262744 15 9605 XP_005245790 15 9605 XP_006710132 15 9605 NP_001036169 15 9605>NP_001185761 Length = 2240 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2218 VLKKARTNL 2226>NP_001185763 Length = 2362 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2324 VLKKARTNL 2332>NP_055459 Length = 2346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2324 VLKKARTNL 2332>XP_006726436 Length = 178 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 102 VLKKARTNL 110>XP_006726410 Length = 2087 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2065 VLKKARTNL 2073>XP_006711784 Length = 178 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 102 VLKKARTNL 110>XP_006711719 Length = 2302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2280 VLKKARTNL 2288>XP_006711718 Length = 1436 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 1331 VLKKARTNL 1339>XP_006711717 Length = 2385 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2280 VLKKARTNL 2288>XP_006711716 Length = 2411 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2389 VLKKARTNL 2397>XP_006711715 Length = 2428 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2323 VLKKARTNL 2331>XP_006711714 Length = 2429 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2324 VLKKARTNL 2332>XP_006711713 Length = 2432 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2327 VLKKARTNL 2335>XP_006711712 Length = 2473 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2368 VLKKARTNL 2376>XP_006711711 Length = 2482 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2377 VLKKARTNL 2385>XP_006711710 Length = 2494 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2389 VLKKARTNL 2397>XP_006711709 Length = 2495 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2390 VLKKARTNL 2398>XP_005277503 Length = 2498 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2487 VLKKARTNL 2495>XP_005273038 Length = 2509 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2487 VLKKARTNL 2495>XP_006711708 Length = 2512 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2407 VLKKARTNL 2415>XP_005277500 Length = 2525 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2487 VLKKARTNL 2495>XP_006711707 Length = 2553 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2448 VLKKARTNL 2456>XP_005277499 Length = 2561 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2487 VLKKARTNL 2495>XP_006711706 Length = 2591 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2486 VLKKARTNL 2494>XP_006711705 Length = 2592 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2487 VLKKARTNL 2495>XP_006711164 Length = 2087 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 2065 VLKKARTNL 2073>XP_005276114 Length = 134 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 72 VLKKARTNL 80>XP_006710122 Length = 126 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 VLKKA TNL Sbjct: 102 VLKKARTNL 110>NP_006209 Length = 1068 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLKKAMTN 8 +LKKA+TN Sbjct: 653 LLKKALTN 660>XP_006713721 Length = 1068 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLKKAMTN 8 +LKKA+TN Sbjct: 653 LLKKALTN 660>XP_006723210 Length = 192 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 +L KA+TNL Sbjct: 69 ILLKALTNL 77>NP_037366 Length = 218 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 +L KA+TNL Sbjct: 69 ILLKALTNL 77>NP_001248344 Length = 753 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KAMTNL 9 KAMTNL Sbjct: 585 KAMTNL 590>NP_694534 Length = 750 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KAMTNL 9 KAMTNL Sbjct: 582 KAMTNL 587>NP_008871 Length = 763 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KAMTNL 9 KAMTNL Sbjct: 595 KAMTNL 600>NP_821078 Length = 377 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KAMTNL 9 KAMTNL Sbjct: 209 KAMTNL 214>NP_001248343 Length = 642 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KAMTNL 9 KAMTNL Sbjct: 474 KAMTNL 479>XP_006719213 Length = 750 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KAMTNL 9 KAMTNL Sbjct: 582 KAMTNL 587>XP_006719212 Length = 750 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KAMTNL 9 KAMTNL Sbjct: 582 KAMTNL 587>NP_001244068 Length = 644 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKKAMTNL 9 +KKA++NL Sbjct: 630 MKKAISNL 637>NP_000076 Length = 687 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKKAMTNL 9 +KKA++NL Sbjct: 673 MKKAISNL 680>NP_001159417 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKKAMTNL 9 +KKA++NL Sbjct: 503 MKKAISNL 510>NP_001008781 Length = 4557 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKKAMTN 8 LKK++TN Sbjct: 635 LKKSLTN 641>NP_001254 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 +LKKA++ L Sbjct: 71 ILKKALSGL 79>NP_004061 Length = 687 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKKAMTNL 9 +KKA++NL Sbjct: 673 MKKAISNL 680>XP_005262744 Length = 421 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VLKKAMTNL 9 +LKKA++ L Sbjct: 71 ILKKALSGL 79>XP_005245790 Length = 686 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKKAMTNL 9 +KKA++NL Sbjct: 672 MKKAISNL 679>XP_006710132 Length = 518 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKKAMTNL 9 +KKA++NL Sbjct: 504 MKKAISNL 511>NP_001036169 Length = 686 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKKAMTNL 9 +KKA++NL Sbjct: 672 MKKAISNL 679Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.125 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 305,475 Number of extensions: 343 Number of successful extensions: 49 Number of sequences better than 10000.0: 49 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 49 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |