Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001138389 18 1935 NP_001138386 18 1935 NP_000132 18 1935 NP_075259 18 1935 NP_001138385 18 1935 XP_006717776 18 1935 XP_006717773 18 1935 XP_006717772 18 1935 XP_006717771 18 1935 NP_055426 17 2528 XP_005248757 17 2528 XP_006715468 17 2528 XP_005248756 17 2528 XP_006715467 17 2528 NP_001191243 17 4312 NP_000940 17 4312 NP_001191245 17 4312 NP_001191244 17 4312 XP_006714547 17 4312 NP_001273004 16 7355 NP_004311 16 7355 NP_775293 16 7355 NP_004781 16 7355 NP_695008 16 7355 NP_695010 16 7355 NP_695009 16 7355 XP_005245660 16 7355 NP_001073895 16 7355 NP_003733 15 9605 NP_001075155 15 9605 NP_066999 15 9605 NP_116242 15 9605 XP_006712881 15 9605 XP_006712880 15 9605 NP_113645 15 9605>NP_001138389 Length = 705 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 86 VLIGEYLQI 94>NP_001138386 Length = 709 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 86 VLIGEYLQI 94>NP_000132 Length = 821 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 86 VLIGEYLQI 94>NP_075259 Length = 822 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 86 VLIGEYLQI 94>NP_001138385 Length = 769 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 86 VLIGEYLQI 94>XP_006717776 Length = 806 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 105 VLIGEYLQI 113>XP_006717773 Length = 807 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 105 VLIGEYLQI 113>XP_006717772 Length = 838 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 105 VLIGEYLQI 113>XP_006717771 Length = 839 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VLIVEYLQI 9 VLI EYLQI Sbjct: 105 VLIGEYLQI 113>NP_055426 Length = 5596 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 +LIV+YLQ Sbjct: 2371 ILIVQYLQ 2378Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 VLIV+YL+ Sbjct: 918 VLIVDYLK 925>XP_005248757 Length = 3591 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 +LIV+YLQ Sbjct: 366 ILIVQYLQ 373>XP_006715468 Length = 3744 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 +LIV+YLQ Sbjct: 519 ILIVQYLQ 526>XP_005248756 Length = 3905 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 +LIV+YLQ Sbjct: 680 ILIVQYLQ 687>XP_006715467 Length = 5550 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 +LIV+YLQ Sbjct: 2371 ILIVQYLQ 2378Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 VLIV+YL+ Sbjct: 918 VLIVDYLK 925>NP_001191243 Length = 521 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LIVEYLQI 9 L+VEYL++ Sbjct: 209 LLVEYLEV 216>NP_000940 Length = 622 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LIVEYLQI 9 L+VEYL++ Sbjct: 310 LLVEYLEV 317>NP_001191245 Length = 376 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LIVEYLQI 9 L+VEYL++ Sbjct: 310 LLVEYLEV 317>NP_001191244 Length = 349 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LIVEYLQI 9 L+VEYL++ Sbjct: 310 LLVEYLEV 317>XP_006714547 Length = 622 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LIVEYLQI 9 L+VEYL++ Sbjct: 310 LLVEYLEV 317>NP_001273004 Length = 869 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 IVEYLQ 8 IVEYLQ Sbjct: 562 IVEYLQ 567>NP_004311 Length = 994 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 IVEYLQ 8 IVEYLQ Sbjct: 687 IVEYLQ 692>NP_775293 Length = 1001 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 IVEYLQ 8 IVEYLQ Sbjct: 687 IVEYLQ 692>NP_004781 Length = 563 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLIVEYLQ 8 VLI+ YLQ Sbjct: 164 VLILNYLQ 171>NP_695008 Length = 550 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLIVEYLQ 8 VLI+ YLQ Sbjct: 164 VLILNYLQ 171>NP_695010 Length = 519 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLIVEYLQ 8 VLI+ YLQ Sbjct: 164 VLILNYLQ 171>NP_695009 Length = 506 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLIVEYLQ 8 VLI+ YLQ Sbjct: 164 VLILNYLQ 171>XP_005245660 Length = 1158 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLIVEYLQI 9 VL+V YL I Sbjct: 234 VLVVAYLMI 242>NP_001073895 Length = 1158 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLIVEYLQI 9 VL+V YL I Sbjct: 234 VLVVAYLMI 242>NP_003733 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLIVEYLQI 9 VLI Y+QI Sbjct: 152 VLITGYIQI 160>NP_001075155 Length = 154 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 VLI+++LQ Sbjct: 9 VLIIQHLQ 16>NP_066999 Length = 355 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VLIVEYLQ 8 VLI+++LQ Sbjct: 9 VLIIQHLQ 16>NP_116242 Length = 711 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LIVEYLQ 8 L+V+YLQ Sbjct: 628 LVVKYLQ 634>XP_006712881 Length = 1335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLIVEYLQI 9 VLI Y+QI Sbjct: 166 VLITGYIQI 174>XP_006712880 Length = 1335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLIVEYLQI 9 VLI Y+QI Sbjct: 166 VLITGYIQI 174>NP_113645 Length = 250 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLIVEYLQI 9 VL+ EYL I Sbjct: 93 VLVGEYLSI 101Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.160 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 461,225 Number of extensions: 644 Number of successful extensions: 37 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |