Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_008986 17 3301 NP_849157 17 3301 NP_036292 17 3301 NP_001265645 17 3301 XP_006717660 17 3301 XP_005266987 17 3301 XP_006715521 17 3301 XP_006714159 17 3301 XP_006714158 17 3301 XP_006714157 17 3301 NP_001185885 17 4312 NP_001185886 17 4312 NP_060912 17 4312 NP_001017977 17 4312 XP_005245390 17 4312 XP_005245389 17 4312 XP_005245388 17 4312 NP_005752 16 7355 XP_006719249 16 7355 XP_006717649 16 7355 XP_006717648 16 7355 XP_006717645 16 7355 XP_006717642 16 7355 XP_006717640 16 7355 XP_006717639 16 7355 XP_006717638 16 7355 XP_006717637 16 7355 XP_006717636 16 7355 XP_006717635 16 7355 XP_006717634 16 7355 XP_006717633 16 7355 XP_006717632 16 7355 XP_006717631 16 7355 XP_005269471 16 7355 XP_006717630 16 7355 XP_006717629 16 7355 XP_005269469 16 7355 XP_005269468 16 7355 XP_006717628 16 7355 XP_006717627 16 7355 XP_006717626 16 7355 XP_006717625 16 7355 XP_006717624 16 7355 XP_005269463 16 7355 XP_005269461 16 7355 XP_006717623 16 7355 XP_005269462 16 7355 NP_004332 15 9605 NP_775862 15 9605 XP_005268859 15 9605 XP_005264615 15 9605 XP_006712164 15 9605 XP_005264614 15 9605 XP_005264613 15 9605 XP_005264612 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VLGTRMTSN 9 VLGTRMTS+ Sbjct: 1865 VLGTRMTSS 1873>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VLGTRMTSN 9 VLGTRMTS+ Sbjct: 1660 VLGTRMTSS 1668>NP_008986 Length = 1390 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 V GTR TSN Sbjct: 1241 VKGTRTTSN 1249>NP_849157 Length = 1077 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 ++GT MTSN Sbjct: 497 LVGTMMTSN 505>NP_036292 Length = 621 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLGTRMTS 8 +LGTRM S Sbjct: 566 ILGTRMVS 573>NP_001265645 Length = 621 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLGTRMTS 8 +LGTRM S Sbjct: 566 ILGTRMVS 573>XP_006717660 Length = 1369 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 V GTR TSN Sbjct: 1220 VKGTRTTSN 1228>XP_005266987 Length = 597 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLGTRMTS 8 +LGTRM S Sbjct: 542 ILGTRMVS 549>XP_006715521 Length = 621 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLGTRMTS 8 +LGTRM S Sbjct: 566 ILGTRMVS 573>XP_006714159 Length = 1077 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 ++GT MTSN Sbjct: 497 LVGTMMTSN 505>XP_006714158 Length = 1077 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 ++GT MTSN Sbjct: 497 LVGTMMTSN 505>XP_006714157 Length = 1077 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 ++GT MTSN Sbjct: 497 LVGTMMTSN 505>NP_001185885 Length = 951 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LGTR T N Sbjct: 223 MLGTRATGN 231>NP_001185886 Length = 920 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LGTR T N Sbjct: 192 MLGTRATGN 200>NP_060912 Length = 880 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LGTR T N Sbjct: 223 MLGTRATGN 231>NP_001017977 Length = 860 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LGTR T N Sbjct: 223 MLGTRATGN 231>XP_005245390 Length = 874 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LGTR T N Sbjct: 223 MLGTRATGN 231>XP_005245389 Length = 894 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LGTR T N Sbjct: 223 MLGTRATGN 231>XP_005245388 Length = 937 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LGTR T N Sbjct: 223 MLGTRATGN 231>NP_005752 Length = 1568 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LG +TSN Sbjct: 403 ILGENLTSN 411>XP_006719249 Length = 1555 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VLGTRMTSN 9 +LG +TSN Sbjct: 403 ILGENLTSN 411>XP_006717649 Length = 1213 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717648 Length = 1217 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717645 Length = 1273 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717642 Length = 1337 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717640 Length = 1424 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 318 VLGPRVTSD 326>XP_006717639 Length = 1472 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717638 Length = 1511 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717637 Length = 1531 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717636 Length = 1539 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717635 Length = 1539 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717634 Length = 1549 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717633 Length = 1551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717632 Length = 1551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 315 VLGPRVTSD 323>XP_006717631 Length = 1554 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 318 VLGPRVTSD 326>XP_005269471 Length = 1554 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 318 VLGPRVTSD 326>XP_006717630 Length = 1561 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717629 Length = 1563 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 327 VLGPRVTSD 335>XP_005269469 Length = 1563 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 327 VLGPRVTSD 335>XP_005269468 Length = 1563 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 327 VLGPRVTSD 335>XP_006717628 Length = 1570 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717627 Length = 1573 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717626 Length = 1574 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717625 Length = 1575 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717624 Length = 1585 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_005269463 Length = 1586 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 350 VLGPRVTSD 358>XP_005269461 Length = 1595 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_006717623 Length = 1595 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>XP_005269462 Length = 1595 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLGTRMTSN 9 VLG R+TS+ Sbjct: 359 VLGPRVTSD 367>NP_004332 Length = 2225 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VLGTRMTS 8 VLG MTS Sbjct: 1277 VLGVEMTS 1284>NP_775862 Length = 2344 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VLGTRMTS 8 VLG MTS Sbjct: 1220 VLGANMTS 1227>XP_005268859 Length = 2361 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VLGTRMTS 8 VLG MTS Sbjct: 1237 VLGANMTS 1244>XP_005264615 Length = 2162 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VLGTRMTS 8 VLG MTS Sbjct: 1214 VLGVEMTS 1221>XP_006712164 Length = 2179 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VLGTRMTS 8 VLG MTS Sbjct: 1214 VLGVEMTS 1221>XP_005264614 Length = 2191 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VLGTRMTS 8 VLG MTS Sbjct: 1277 VLGVEMTS 1284>XP_005264613 Length = 2208 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VLGTRMTS 8 VLG MTS Sbjct: 1277 VLGVEMTS 1284>XP_005264612 Length = 2242 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 VLGTRMTS 8 VLG MTS Sbjct: 1277 VLGVEMTS 1284Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.123 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 396,709 Number of extensions: 712 Number of successful extensions: 57 Number of sequences better than 10000.0: 57 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 57 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |