Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_079216 19 665 XP_005273708 19 665 XP_006716465 19 665 XP_005273707 19 665 NP_005091 18 1135 NP_653080 18 1135 XP_005267292 18 1135 XP_005267291 18 1135 XP_005267290 18 1135 NP_055935 16 5631 NP_005219 16 7355 NP_004710 16 7355 XP_006719755 16 7355 XP_005269287 16 7355 NP_001273651 15 9605 NP_055427 15 9605 NP_001273652 15 9605 XP_006726603 15 9605 XP_006725215 15 9605 XP_006719239 15 9605 XP_006719237 15 9605 XP_005251899 15 9605 XP_005265887 15 9605 NP_004937 15 9605>NP_079216 Length = 1870 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVS+AIEE Sbjct: 513 VKVSIAIEE 521>XP_005273708 Length = 1032 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVS+AIEE Sbjct: 227 VKVSIAIEE 235>XP_006716465 Length = 1826 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVS+AIEE Sbjct: 513 VKVSIAIEE 521>XP_005273707 Length = 1847 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVS+AIEE Sbjct: 513 VKVSIAIEE 521>NP_005091 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVSVAIE+ Sbjct: 1524 VKVSVAIED 1532>NP_653080 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVSVAIE+ Sbjct: 1426 VKVSVAIED 1434>XP_005267292 Length = 1677 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVSVAIE+ Sbjct: 1419 VKVSVAIED 1427>XP_005267291 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVSVAIE+ Sbjct: 1426 VKVSVAIED 1434>XP_005267290 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 VKVSVAIE+ Sbjct: 1524 VKVSVAIED 1532>NP_055935 Length = 4169 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KVSVAIEE 9 KVS+A+EE Sbjct: 2370 KVSMALEE 2377>NP_005219 Length = 1210 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VKVSVAIEE 9 VK+ VAI+E Sbjct: 738 VKIPVAIKE 746>NP_004710 Length = 1463 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVSVAIE 8 KVSVA+E Sbjct: 1359 KVSVAVE 1365>XP_006719755 Length = 1418 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVSVAIE 8 KVSVA+E Sbjct: 1314 KVSVAVE 1320>XP_005269287 Length = 1527 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KVSVAIE 8 KVSVA+E Sbjct: 1423 KVSVAVE 1429>NP_001273651 Length = 1117 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 +K++V+IE+ Sbjct: 580 IKIAVSIED 588>NP_055427 Length = 1118 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 +K++V+IE+ Sbjct: 581 IKIAVSIED 589>NP_001273652 Length = 651 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 +K++V+IE+ Sbjct: 581 IKIAVSIED 589>XP_006726603 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VKVSVAIEE 9 V++SV +EE Sbjct: 633 VEISVQVEE 641>XP_006725215 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VKVSVAIEE 9 V++SV +EE Sbjct: 633 VEISVQVEE 641>XP_006719239 Length = 1066 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VKVSVAIEE 9 V++SV +EE Sbjct: 851 VEISVQVEE 859>XP_006719237 Length = 1263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VKVSVAIEE 9 V++SV +EE Sbjct: 633 VEISVQVEE 641>XP_005251899 Length = 1117 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VKVSVAIEE 9 +K++V+IE+ Sbjct: 581 IKIAVSIED 589>XP_005265887 Length = 939 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VKVSVAIEE 9 VKV+V IE+ Sbjct: 493 VKVAVPIED 501>NP_004937 Length = 1830 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VKVSVAIEE 9 VKV+V IE+ Sbjct: 493 VKVAVPIED 501Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.121 0.261 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 292,372 Number of extensions: 243 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |