Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 21 175 XP_005271621 21 175 XP_006718906 21 175 XP_005271619 21 175 XP_005271618 21 175 NP_055736 17 2528 NP_001008701 17 2528 XP_005259876 17 2528 XP_006722752 17 2528 XP_005259875 17 2528 XP_006722751 17 2528 NP_071933 17 3301 XP_006716233 17 4312 NP_443085 17 4312 NP_000375 16 5631 NP_060918 16 5631 NP_005903 16 7355 NP_005786 16 7355 NP_001258680 16 7355 XP_005247225 16 7355 XP_005247224 16 7355 XP_005246291 16 7355 XP_005246289 16 7355 XP_005246288 16 7355 NP_997218 16 7355 NP_001029 15 9605 NP_001153048 15 9605 NP_001153047 15 9605 NP_055445 15 9605 XP_005255053 15 9605 XP_005253552 15 9605 XP_005253550 15 9605>NP_000042 Length = 3056 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 +HMYLMLLK Sbjct: 944 LHMYLMLLK 952>XP_005271621 Length = 2708 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 +HMYLMLLK Sbjct: 596 LHMYLMLLK 604>XP_006718906 Length = 3056 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 +HMYLMLLK Sbjct: 944 LHMYLMLLK 952>XP_005271619 Length = 3056 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 +HMYLMLLK Sbjct: 944 LHMYLMLLK 952>XP_005271618 Length = 3056 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 +HMYLMLLK Sbjct: 944 LHMYLMLLK 952>NP_055736 Length = 1469 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 VH+YL+L++ Sbjct: 941 VHLYLLLVE 949>NP_001008701 Length = 1474 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 VH+YL+L++ Sbjct: 946 VHLYLLLVE 954>XP_005259876 Length = 1498 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 VH+YL+L++ Sbjct: 946 VHLYLLLVE 954>XP_006722752 Length = 1462 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 VH+YL+L++ Sbjct: 910 VHLYLLLVE 918>XP_005259875 Length = 1493 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 VH+YL+L++ Sbjct: 941 VHLYLLLVE 949>XP_006722751 Length = 1498 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VHMYLMLLK 9 VH+YL+L++ Sbjct: 946 VHLYLLLVE 954>NP_071933 Length = 314 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VHMYLML 7 VHMYL++ Sbjct: 286 VHMYLLI 292>XP_006716233 Length = 542 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VHMYLMLLK 9 VHM L+L+K Sbjct: 321 VHMDLLLMK 329>NP_443085 Length = 626 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VHMYLMLLK 9 VHM L+L+K Sbjct: 321 VHMDLLLMK 329>NP_000375 Length = 4563 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VHMYLMLLK 9 +H Y+M L+ Sbjct: 4377 IHQYIMALR 4385>NP_060918 Length = 1230 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 HMYLMLLK 9 H YL LLK Sbjct: 396 HAYLSLLK 403>NP_005903 Length = 332 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VHMYLM 6 VHM+LM Sbjct: 213 VHMFLM 218>NP_005786 Length = 461 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 VHMYLM 6 +H+YLM Sbjct: 218 IHLYLM 223>NP_001258680 Length = 461 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 VHMYLM 6 +H+YLM Sbjct: 218 IHLYLM 223>XP_005247225 Length = 623 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VHMYLMLLK 9 VH +L L+K Sbjct: 174 VHQFLTLIK 182>XP_005247224 Length = 623 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VHMYLMLLK 9 VH +L L+K Sbjct: 174 VHQFLTLIK 182>XP_005246291 Length = 472 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 VHMYLM 6 +H+YLM Sbjct: 229 IHLYLM 234>XP_005246289 Length = 472 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 VHMYLM 6 +H+YLM Sbjct: 229 IHLYLM 234>XP_005246288 Length = 472 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 VHMYLM 6 +H+YLM Sbjct: 229 IHLYLM 234>NP_997218 Length = 623 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VHMYLMLLK 9 VH +L L+K Sbjct: 174 VHQFLTLIK 182>NP_001029 Length = 669 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VHMYLMLLK 9 V M+LMLL+ Sbjct: 578 VIMFLMLLR 586>NP_001153048 Length = 728 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VHMYLMLLK 9 V M+LMLL+ Sbjct: 637 VIMFLMLLR 645>NP_001153047 Length = 692 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VHMYLMLLK 9 V M+LMLL+ Sbjct: 601 VIMFLMLLR 609>NP_055445 Length = 1267 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VHMYLMLLK 9 VH+ L LLK Sbjct: 807 VHLTLALLK 815>XP_005255053 Length = 1267 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VHMYLMLLK 9 VH+ L LLK Sbjct: 807 VHLTLALLK 815>XP_005253552 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 VHMYLML 7 +H+YL+L Sbjct: 136 LHLYLLL 142>XP_005253550 Length = 386 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 VHMYLML 7 +H+YL+L Sbjct: 136 LHLYLLL 142Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.151 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 406,149 Number of extensions: 515 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |