Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1935 XP_005271621 18 1935 XP_006718907 18 1935 XP_006718906 18 1935 XP_005271619 18 1935 XP_005271618 18 1935 NP_001129735 17 2528 XP_006722712 17 2528 NP_065103 16 7355 NP_057006 15 9605 NP_001123237 15 9605 NP_001129628 15 9605 NP_055725 15 9605 XP_006724887 15 9605>NP_000042 Length = 3056 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 V MLAAESI Sbjct: 1085 VRMLAAESI 1093>XP_005271621 Length = 2708 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 V MLAAESI Sbjct: 737 VRMLAAESI 745>XP_006718907 Length = 3050 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 V MLAAESI Sbjct: 1079 VRMLAAESI 1087>XP_006718906 Length = 3056 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 V MLAAESI Sbjct: 1085 VRMLAAESI 1093>XP_005271619 Length = 3056 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 V MLAAESI Sbjct: 1085 VRMLAAESI 1093>XP_005271618 Length = 3056 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 V MLAAESI Sbjct: 1085 VRMLAAESI 1093>NP_001129735 Length = 421 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 VH+LAAE + Sbjct: 324 VHLLAAEGL 332>XP_006722712 Length = 446 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 VH+LAAE + Sbjct: 324 VHLLAAEGL 332>NP_065103 Length = 396 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VHMLAA 6 VHMLAA Sbjct: 351 VHMLAA 356>NP_057006 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HMLAAESI 9 H+LAAE + Sbjct: 247 HILAAEQL 254>NP_001123237 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HMLAAESI 9 H+LAAE + Sbjct: 247 HILAAEQL 254>NP_001129628 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 +H LAAE++ Sbjct: 492 LHSLAAEAL 500>NP_055725 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VHMLAAESI 9 +H LAAE++ Sbjct: 492 LHSLAAEAL 500>XP_006724887 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HMLAAESI 9 H+LAAE + Sbjct: 247 HILAAEQL 254Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.125 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 344,243 Number of extensions: 367 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |