Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000318 18 1935 NP_055078 17 2528 NP_443179 17 2528 NP_647473 17 2528 NP_001240795 17 2528 NP_005548 17 3301 NP_001195 17 3301 NP_000517 17 3301 NP_064612 17 4312 XP_006724319 17 4312 XP_006724318 17 4312 XP_006724317 17 4312 XP_005259901 17 4312 XP_005259899 17 4312 XP_005259898 17 4312 XP_005256332 17 4312 NP_848591 17 4312 NP_065955 16 5631 NP_001154826 16 5631 XP_006723364 16 5631 XP_005259166 16 5631 XP_005259165 16 5631 XP_005259164 16 5631 XP_006714452 16 5631 XP_005263363 16 5631 XP_005263362 16 5631 XP_006714426 16 5631 XP_006714425 16 5631 XP_006714424 16 5631 XP_006714423 16 5631 XP_006714420 16 5631 XP_006714419 16 5631 XP_006714418 16 5631 XP_006714417 16 5631 XP_005263359 16 5631 XP_006714416 16 5631 XP_006714415 16 5631 XP_006714414 16 5631 XP_006714413 16 5631 XP_006714412 16 5631 XP_006714411 16 5631 XP_006714410 16 5631 XP_006714409 16 5631 XP_006714408 16 5631 NP_006100 16 7355 NP_073616 16 7355 NP_001269884 16 7355 XP_006717299 16 7355 XP_005272263 16 7355 NP_619526 16 7355 NP_000949 15 9605 NP_004647 15 9605 NP_071496 15 9605 NP_110435 15 9605 XP_006721644 15 9605 XP_005256863 15 9605 XP_005248384 15 9605 XP_005248383 15 9605>NP_000318 Length = 351 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 VGVG+SR S Sbjct: 79 VGVGASRAS 87>NP_055078 Length = 716 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGVGSSRV 8 VGVG+SR+ Sbjct: 356 VGVGASRI 363>NP_443179 Length = 2170 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 VGV SSRVS Sbjct: 410 VGVRSSRVS 418>NP_647473 Length = 773 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGVGSSRV 8 VGVG+SR+ Sbjct: 413 VGVGASRI 420>NP_001240795 Length = 683 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGVGSSRV 8 VGVG+SR+ Sbjct: 323 VGVGASRI 330>NP_005548 Length = 473 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G GSSR+S Sbjct: 24 IGGGSSRIS 32>NP_001195 Length = 1038 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G+G SR+S Sbjct: 44 LGIGESRIS 52>NP_000517 Length = 472 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G GSSR+S Sbjct: 24 IGGGSSRIS 32>NP_064612 Length = 894 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 VGVG SR++ Sbjct: 514 VGVGISRIA 522>XP_006724319 Length = 452 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVGSSRVS 9 G+G SRVS Sbjct: 265 GIGPSRVS 272>XP_006724318 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVGSSRVS 9 G+G SRVS Sbjct: 269 GIGPSRVS 276>XP_006724317 Length = 492 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVGSSRVS 9 G+G SRVS Sbjct: 305 GIGPSRVS 312>XP_005259901 Length = 412 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +GVG+ RVS Sbjct: 1 MGVGAGRVS 9>XP_005259899 Length = 441 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +GVG+ RVS Sbjct: 1 MGVGAGRVS 9>XP_005259898 Length = 442 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +GVG+ RVS Sbjct: 1 MGVGAGRVS 9>XP_005256332 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 VGVG SR++ Sbjct: 365 VGVGISRIA 373>NP_848591 Length = 491 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGVGSSRV 8 +GVGSSR+ Sbjct: 224 LGVGSSRM 231>NP_065955 Length = 779 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G+GS RVS Sbjct: 555 LGLGSPRVS 563>NP_001154826 Length = 583 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G+GS RVS Sbjct: 530 LGLGSPRVS 538>XP_006723364 Length = 637 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G+GS RVS Sbjct: 530 LGLGSPRVS 538>XP_005259166 Length = 595 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G+GS RVS Sbjct: 555 LGLGSPRVS 563>XP_005259165 Length = 662 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G+GS RVS Sbjct: 555 LGLGSPRVS 563>XP_005259164 Length = 754 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGVGSSRVS 9 +G+GS RVS Sbjct: 530 LGLGSPRVS 538>XP_006714452 Length = 707 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_005263363 Length = 1092 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_005263362 Length = 1117 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_006714426 Length = 1145 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_006714425 Length = 1155 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 114 GVGSSRL 120>XP_006714424 Length = 1186 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 145 GVGSSRL 151>XP_006714423 Length = 1265 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 224 GVGSSRL 230>XP_006714420 Length = 1265 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 224 GVGSSRL 230>XP_006714419 Length = 1265 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 224 GVGSSRL 230>XP_006714418 Length = 1300 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_006714417 Length = 1319 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_005263359 Length = 1340 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_006714416 Length = 1346 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 305 GVGSSRL 311>XP_006714415 Length = 1347 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_006714414 Length = 1369 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 328 GVGSSRL 334>XP_006714413 Length = 1369 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 328 GVGSSRL 334>XP_006714412 Length = 1372 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_006714411 Length = 1377 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 336 GVGSSRL 342>XP_006714410 Length = 1385 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_006714409 Length = 1400 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>XP_006714408 Length = 1400 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GVGSSRV 8 GVGSSR+ Sbjct: 359 GVGSSRL 365>NP_006100 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GVGSSRVS 9 G G SRVS Sbjct: 8 GAGGSRVS 15>NP_073616 Length = 851 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GVGSSRV 8 G GSSRV Sbjct: 75 GAGSSRV 81>NP_001269884 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GVGSSRVS 9 G G SRVS Sbjct: 8 GAGGSRVS 15>XP_006717299 Length = 691 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GVGSSRV 8 G GSSRV Sbjct: 75 GAGSSRV 81>XP_005272263 Length = 778 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GVGSSRV 8 G GSSRV Sbjct: 75 GAGSSRV 81>NP_619526 Length = 585 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GVGSSRV 8 G GSSRV Sbjct: 75 GAGSSRV 81>NP_000949 Length = 488 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VGVGSSRV 8 +G+GSSR+ Sbjct: 156 MGLGSSRL 163>NP_004647 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GVGSSRV 8 GVG SRV Sbjct: 380 GVGRSRV 386>NP_071496 Length = 248 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVGSSRVS 9 G+GSSR S Sbjct: 137 GMGSSRES 144>NP_110435 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVGSSRVS 9 G+GSSR S Sbjct: 328 GLGSSRPS 335>XP_006721644 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVGSSRVS 9 G+GSSR S Sbjct: 328 GLGSSRPS 335>XP_005256863 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVGSSRVS 9 G+GSSR S Sbjct: 328 GLGSSRPS 335>XP_005248384 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VGVGSSRV 8 +G+GSSR+ Sbjct: 156 MGLGSSRL 163>XP_005248383 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VGVGSSRV 8 +G+GSSR+ Sbjct: 156 MGLGSSRL 163Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.124 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 402,763 Number of extensions: 465 Number of successful extensions: 58 Number of sequences better than 10000.0: 58 Number of HSP's gapped: 58 Number of HSP's successfully gapped: 58 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |