Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 19 869 NP_653080 19 869 XP_005267292 19 869 XP_005267291 19 869 XP_005267290 19 869 NP_066976 16 5631 NP_001257957 16 5631 XP_006722504 16 5631 XP_006722503 16 5631 NP_000930 15 9605 NP_001030333 15 9605 NP_000287 15 9605 NP_001009944 15 9605 NP_079032 15 9605 NP_112599 15 9605 NP_113609 15 9605 XP_006722192 15 9605 XP_005255427 15 9605 XP_006720956 15 9605 XP_006720955 15 9605 XP_006720954 15 9605 XP_006720953 15 9605 XP_006720952 15 9605 XP_005270210 15 9605 XP_006718033 15 9605>NP_005091 Length = 1782 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VGQARSDIS 9 VGQA SDIS Sbjct: 1623 VGQAHSDIS 1631>NP_653080 Length = 1684 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VGQARSDIS 9 VGQA SDIS Sbjct: 1525 VGQAHSDIS 1533>XP_005267292 Length = 1677 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VGQARSDIS 9 VGQA SDIS Sbjct: 1518 VGQAHSDIS 1526>XP_005267291 Length = 1684 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VGQARSDIS 9 VGQA SDIS Sbjct: 1525 VGQAHSDIS 1533>XP_005267290 Length = 1782 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VGQARSDIS 9 VGQA SDIS Sbjct: 1623 VGQAHSDIS 1631>NP_066976 Length = 772 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 +GQ RSD+ Sbjct: 63 IGQLRSDL 70>NP_001257957 Length = 490 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 +GQ RSD+ Sbjct: 63 IGQLRSDL 70>XP_006722504 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 +GQ RSD+ Sbjct: 63 IGQLRSDL 70>XP_006722503 Length = 772 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 +GQ RSD+ Sbjct: 63 IGQLRSDL 70>NP_000930 Length = 267 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GQARSDIS 9 GQ R D+S Sbjct: 101 GQKREDVS 108>NP_001030333 Length = 267 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GQARSDIS 9 GQ R D+S Sbjct: 101 GQKREDVS 108>NP_000287 Length = 4302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 VGQ +SD+ Sbjct: 3392 VGQMKSDL 3399>NP_001009944 Length = 4303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 VGQ +SD+ Sbjct: 3393 VGQMKSDL 3400>NP_079032 Length = 949 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VGQARSDI 8 VGQ R D+ Sbjct: 304 VGQLRQDV 311>NP_112599 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GQARSDI 8 G+ARSD+ Sbjct: 25 GRARSDL 31>NP_113609 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GQARSDI 8 G+ARSD+ Sbjct: 572 GKARSDL 578>XP_006722192 Length = 509 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GQARSDI 8 G+ARSD+ Sbjct: 409 GKARSDL 415>XP_005255427 Length = 3288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 VGQ +SD+ Sbjct: 2378 VGQMKSDL 2385>XP_006720956 Length = 3895 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 VGQ +SD+ Sbjct: 2985 VGQMKSDL 2992>XP_006720955 Length = 4279 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 VGQ +SD+ Sbjct: 3369 VGQMKSDL 3376>XP_006720954 Length = 4334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 VGQ +SD+ Sbjct: 3424 VGQMKSDL 3431>XP_006720953 Length = 4339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 VGQ +SD+ Sbjct: 3429 VGQMKSDL 3436>XP_006720952 Length = 4340 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGQARSDI 8 VGQ +SD+ Sbjct: 3430 VGQMKSDL 3437>XP_005270210 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VGQARSDI 8 VGQ R D+ Sbjct: 243 VGQLRQDV 250>XP_006718033 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 VGQARSDI 8 VGQ R D+ Sbjct: 243 VGQLRQDV 250Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.123 0.307 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 418,377 Number of extensions: 512 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |