Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005350 18 1482 NP_001627 17 2528 NP_001143 17 3301 NP_001275716 17 3301 NP_001275715 17 3301 NP_001275717 17 3301 NP_001275718 17 3301 NP_001076437 17 3301 NP_001028723 17 3301 XP_005256523 17 3301 XP_005256520 17 3301 XP_005256519 17 3301 XP_006721515 17 3301 XP_005256518 17 3301 NP_037518 17 4312 NP_998816 17 4312 NP_001142 17 4312 NP_001740 17 4312 XP_005259353 17 4312 XP_005259352 17 4312 NP_112581 17 4312 NP_001003962 17 4312 NP_061729 17 4312 NP_113685 17 4312 NP_001615 16 5631 XP_005266896 16 5631 XP_006714613 16 7355 XP_006714612 16 7355 XP_006714611 16 7355 XP_006714610 16 7355 XP_006714609 16 7355 XP_006714608 16 7355 XP_005271959 16 7355 XP_006714606 16 7355 NP_055529 15 9605 XP_005255783 15 9605 XP_005255782 15 9605 XP_006721054 15 9605 XP_006721053 15 9605 XP_006721052 15 9605 NP_937792 15 9605>NP_005350 Length = 552 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VGGIASAIS 9 VGGIA AIS Sbjct: 475 VGGIAPAIS 483>NP_001627 Length = 298 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 GGIASAIS 9 GGIA+AIS Sbjct: 15 GGIAAAIS 22>NP_001143 Length = 298 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 GGIASAIS 9 GG+A+AIS Sbjct: 15 GGVAAAIS 22>NP_001275716 Length = 462 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 365 VGGLASAL 372>NP_001275715 Length = 483 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 357 VGGLASAL 364>NP_001275717 Length = 389 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 312 VGGLASAL 319>NP_001275718 Length = 388 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 262 VGGLASAL 269>NP_001076437 Length = 507 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 410 VGGLASAL 417>NP_001028723 Length = 457 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 360 VGGLASAL 367>XP_005256523 Length = 438 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 312 VGGLASAL 319>XP_005256520 Length = 487 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 410 VGGLASAL 417>XP_005256519 Length = 491 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 365 VGGLASAL 372>XP_006721515 Length = 503 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 377 VGGLASAL 384>XP_005256518 Length = 536 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VGGIASAI 8 VGG+ASA+ Sbjct: 410 VGGLASAL 417>NP_037518 Length = 477 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GGIA A+S Sbjct: 201 GGIAGAVS 208>NP_998816 Length = 458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GGIA A+S Sbjct: 182 GGIAGAVS 189>NP_001142 Length = 298 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GGIASAIS 9 GG+A+A+S Sbjct: 15 GGVAAAVS 22>NP_001740 Length = 268 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGGIASAIS 9 +GG+ SAIS Sbjct: 62 LGGVISAIS 70>XP_005259353 Length = 322 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGGIASAIS 9 +GG+ SAIS Sbjct: 62 LGGVISAIS 70>XP_005259352 Length = 322 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGGIASAIS 9 +GG+ SAIS Sbjct: 62 LGGVISAIS 70>NP_112581 Length = 315 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GGIASAIS 9 GG+A+A+S Sbjct: 27 GGVAAAVS 34>NP_001003962 Length = 268 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGGIASAIS 9 +GG+ SAIS Sbjct: 62 LGGVISAIS 70>NP_061729 Length = 950 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VGGIASAIS 9 VGGI A+S Sbjct: 570 VGGIGGAVS 578>NP_113685 Length = 824 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VGGIASAIS 9 VGGI A+S Sbjct: 570 VGGIGGAVS 578>NP_001615 Length = 1723 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+ASA S Sbjct: 68 GGVASAAS 75>XP_005266896 Length = 2131 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+ASA S Sbjct: 476 GGVASAAS 483>XP_006714613 Length = 276 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+A AIS Sbjct: 223 GGMAGAIS 230>XP_006714612 Length = 280 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+A AIS Sbjct: 223 GGMAGAIS 230>XP_006714611 Length = 311 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+A AIS Sbjct: 223 GGMAGAIS 230>XP_006714610 Length = 311 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+A AIS Sbjct: 223 GGMAGAIS 230>XP_006714609 Length = 311 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+A AIS Sbjct: 223 GGMAGAIS 230>XP_006714608 Length = 312 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+A AIS Sbjct: 223 GGMAGAIS 230>XP_005271959 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+A AIS Sbjct: 223 GGMAGAIS 230>XP_006714606 Length = 361 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GGIASAIS 9 GG+A AIS Sbjct: 223 GGMAGAIS 230>NP_055529 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VGGIAS 6 VGGIAS Sbjct: 569 VGGIAS 574>XP_005255783 Length = 801 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VGGIAS 6 VGGIAS Sbjct: 569 VGGIAS 574>XP_005255782 Length = 807 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VGGIAS 6 VGGIAS Sbjct: 569 VGGIAS 574>XP_006721054 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VGGIAS 6 VGGIAS Sbjct: 569 VGGIAS 574>XP_006721053 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VGGIAS 6 VGGIAS Sbjct: 569 VGGIAS 574>XP_006721052 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VGGIAS 6 VGGIAS Sbjct: 569 VGGIAS 574>NP_937792 Length = 197 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VGGIASAI 8 + GIASA+ Sbjct: 86 IAGIASAV 93Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.130 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 326,739 Number of extensions: 483 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |