Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 509 NP_001075109 20 509 NP_006234 17 2528 NP_001186685 17 2528 NP_001269109 17 2528 NP_006237 17 2528 NP_001269111 17 2528 NP_001269110 17 2528 NP_001269108 17 2528 NP_000937 17 4312 NP_001071107 17 4312 NP_060148 17 4312 NP_001136076 16 5631 NP_000301 16 5631 NP_001155197 16 5631 NP_848702 16 5631 NP_001155198 16 5631 NP_848701 16 5631 NP_002710 16 5631 XP_005267884 16 5631 XP_005267883 16 5631 XP_005267881 16 5631 XP_005267880 16 5631 XP_005267879 16 5631 XP_005267877 16 5631 XP_005267876 16 5631 XP_005271065 16 5631 XP_005271064 16 5631 NP_004945 15 9605 NP_059672 15 9605 NP_001121167 15 9605 NP_001161066 15 9605 NP_000299 15 9605 NP_775899 15 9605 NP_003123 15 9605 XP_006718509 15 9605 XP_006718505 15 9605 XP_006718504 15 9605>NP_008835 Length = 4128 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VFVRKSLNN 9 VFVRKSLN+ Sbjct: 67 VFVRKSLNS 75>NP_001075109 Length = 4097 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VFVRKSLNN 9 VFVRKSLN+ Sbjct: 67 VFVRKSLNS 75>NP_006234 Length = 486 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 F+RK +NN Sbjct: 224 FIRKQINN 231>NP_001186685 Length = 429 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 F+RK +NN Sbjct: 167 FIRKQINN 174>NP_001269109 Length = 462 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 F+RK +NN Sbjct: 216 FIRKQINN 223>NP_006237 Length = 467 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 F+RK +NN Sbjct: 216 FIRKQINN 223>NP_001269111 Length = 391 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 F+RK +NN Sbjct: 140 FIRKQINN 147>NP_001269110 Length = 391 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 F+RK +NN Sbjct: 140 FIRKQINN 147>NP_001269108 Length = 467 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 F+RK +NN Sbjct: 216 FIRKQINN 223>NP_000937 Length = 420 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 F+RKS+N Sbjct: 211 FIRKSIN 217>NP_001071107 Length = 544 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VFVRKSLN 8 VF+R++LN Sbjct: 446 VFIRRALN 453>NP_060148 Length = 260 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VFVRKSLN 8 VF+R++LN Sbjct: 162 VFIRRALN 169>NP_001136076 Length = 203 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 F+RK+LN Sbjct: 59 FIRKTLN 65>NP_000301 Length = 306 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 F+RK+LN Sbjct: 162 FIRKTLN 168>NP_001155197 Length = 555 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 230 YIRKQINN 237>NP_848702 Length = 449 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 199 YIRKQINN 206>NP_001155198 Length = 540 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 254 YIRKQINN 261>NP_848701 Length = 485 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 199 YIRKQINN 206>NP_002710 Length = 524 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 199 YIRKQINN 206>XP_005267884 Length = 449 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 124 YIRKQINN 131>XP_005267883 Length = 500 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 175 YIRKQINN 182>XP_005267881 Length = 539 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 259 YIRKQINN 266>XP_005267880 Length = 545 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 259 YIRKQINN 266>XP_005267879 Length = 556 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 259 YIRKQINN 266>XP_005267877 Length = 579 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 254 YIRKQINN 261>XP_005267876 Length = 584 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 ++RK +NN Sbjct: 259 YIRKQINN 266>XP_005271065 Length = 282 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 F+RK+LN Sbjct: 162 FIRKTLN 168>XP_005271064 Length = 339 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 F+RK+LN Sbjct: 162 FIRKTLN 168>NP_004945 Length = 724 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 FVR++LN Sbjct: 587 FVRRNLN 593>NP_059672 Length = 745 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 FVR++LN Sbjct: 608 FVRRNLN 614>NP_001121167 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 +VRK+LN Sbjct: 345 YVRKALN 351>NP_001161066 Length = 481 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 +VRK+LN Sbjct: 346 YVRKALN 352>NP_000299 Length = 498 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 +VRK+LN Sbjct: 363 YVRKALN 369>NP_775899 Length = 4462 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 F+RKSL+ Sbjct: 877 FIRKSLS 883>NP_003123 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVRKSLNN 9 F RK+LN+ Sbjct: 293 FARKALND 300>XP_006718509 Length = 725 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 FVR++LN Sbjct: 588 FVRRNLN 594>XP_006718505 Length = 778 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 FVR++LN Sbjct: 641 FVRRNLN 647>XP_006718504 Length = 779 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FVRKSLN 8 FVR++LN Sbjct: 642 FVRRNLN 648Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.136 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 395,704 Number of extensions: 534 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |