Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001129047 17 3301 NP_536724 17 3301 NP_000360 17 3301 XP_005268094 17 3301 NP_071319 17 4312 NP_061123 17 4312 XP_005257571 17 4312 XP_005257570 17 4312 XP_005257569 17 4312 NP_061722 16 5631 NP_001248770 16 5631 XP_005255642 16 5631 NP_001098718 16 5631 NP_079056 16 5631 NP_114089 16 5631 NP_001005487 16 5631 NP_115655 16 7355 XP_005247886 16 7355 XP_006713849 16 7355 NP_001026851 15 9605 NP_004928 15 9605 NP_071351 15 9605 NP_001231875 15 9605 NP_061111 15 9605 NP_064732 15 9605 NP_001230723 15 9605 NP_004293 15 9605 NP_064733 15 9605 NP_001230724 15 9605 XP_006721527 15 9605 XP_006721526 15 9605 XP_005256542 15 9605 XP_006719748 15 9605>NP_001129047 Length = 91 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VFV TL+IV Sbjct: 11 VFVATLLIV 19>NP_536724 Length = 435 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 +FVLT II+ Sbjct: 355 IFVLTCIII 363>NP_000360 Length = 764 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VFVLTL IV Sbjct: 584 VFVLTLNIV 592>XP_005268094 Length = 764 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VFVLTL IV Sbjct: 584 VFVLTLNIV 592>NP_071319 Length = 486 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 FVLT+I+V Sbjct: 110 FVLTIILV 117>NP_061123 Length = 453 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 FVLT+I+V Sbjct: 77 FVLTIILV 84>XP_005257571 Length = 496 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 FVLT+I+V Sbjct: 110 FVLTIILV 117>XP_005257570 Length = 542 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 FVLT+I+V Sbjct: 165 FVLTIILV 172>XP_005257569 Length = 551 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 FVLT+I+V Sbjct: 165 FVLTIILV 172>NP_061722 Length = 1007 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VFVLTLIIV 9 +F+LT+II+ Sbjct: 718 IFLLTIIIL 726>NP_001248770 Length = 1006 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 F+LTLI++ Sbjct: 909 FILTLIVL 916>XP_005255642 Length = 647 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 F+LTLI++ Sbjct: 550 FILTLIVL 557>NP_001098718 Length = 1006 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 F+LTLI++ Sbjct: 909 FILTLIVL 916>NP_079056 Length = 760 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FVLTLIIV 9 F+LTLI++ Sbjct: 663 FILTLIVL 670>NP_114089 Length = 884 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VFVLTLIIV 9 +F+LT+II+ Sbjct: 718 IFLLTIIIL 726>NP_001005487 Length = 307 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VF+LTL +V Sbjct: 58 VFLLTLAVV 66>NP_115655 Length = 1196 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VFVLTLII 8 +FVL LII Sbjct: 1071 IFVLVLII 1078>XP_005247886 Length = 1127 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VFVLTLII 8 +FVL LII Sbjct: 1071 IFVLVLII 1078>XP_006713849 Length = 1147 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VFVLTLII 8 +FVL LII Sbjct: 1022 IFVLVLII 1029>NP_001026851 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLTLIIV 9 VLTLII+ Sbjct: 214 VLTLIII 220>NP_004928 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLTLIIV 9 VLTLII+ Sbjct: 214 VLTLIII 220>NP_071351 Length = 2752 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVLTLIIV 9 FVLT+I + Sbjct: 1300 FVLTIIFI 1307>NP_001231875 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VFVLTLII 8 VF+LTL++ Sbjct: 412 VFLLTLLL 419>NP_061111 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VF++ LIIV Sbjct: 16 VFMILLIIV 24>NP_064732 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VF+L LII+ Sbjct: 83 VFLLFLIII 91>NP_001230723 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VF++ LIIV Sbjct: 16 VFMILLIIV 24>NP_004293 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VF+L LII+ Sbjct: 135 VFLLFLIII 143>NP_064733 Length = 546 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VF+L LII+ Sbjct: 135 VFLLFLIII 143>NP_001230724 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VF++ LIIV Sbjct: 16 VFMILLIIV 24>XP_006721527 Length = 253 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLTLIIV 9 VLTLII+ Sbjct: 67 VLTLIII 73>XP_006721526 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLTLIIV 9 VLTLII+ Sbjct: 214 VLTLIII 220>XP_005256542 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLTLIIV 9 VLTLII+ Sbjct: 214 VLTLIII 220>XP_006719748 Length = 545 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFVLTLIIV 9 VF+L LII+ Sbjct: 135 VFLLFLIII 143Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.359 0.174 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 292,478 Number of extensions: 447 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |