Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_149016 17 3301 XP_005265460 17 3301 NP_775764 17 4312 NP_001032208 16 5631 NP_001231817 16 5631 NP_055729 16 5631 XP_006712304 16 5631 XP_006712303 16 5631 XP_006712302 16 5631 XP_006712301 16 5631 XP_006712300 16 5631 XP_005246116 16 5631 XP_006712299 16 5631 XP_005246115 16 5631 XP_006712298 16 5631 XP_006712297 16 5631 NP_056197 16 7355 NP_001268229 16 7355 NP_963848 16 7355 NP_001336 16 7355 NP_958852 16 7355 NP_114152 16 7355 XP_005267560 16 7355 XP_005267559 16 7355 XP_006719323 16 7355 XP_005268745 16 7355 XP_006715912 16 7355 NP_958853 16 7355 NP_000050 15 9605 NP_001271282 15 9605 NP_001271281 15 9605 NP_065826 15 9605 NP_001253977 15 9605 NP_055045 15 9605 NP_066363 15 9605 XP_006723899 15 9605 NP_005399 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 FTSKKVSD Sbjct: 1523 FTSKKVSD 1530>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 FTSKKVSD Sbjct: 1318 FTSKKVSD 1325>NP_149016 Length = 589 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 +TS+KVSD Sbjct: 520 YTSQKVSD 527>XP_005265460 Length = 589 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 +TS+KVSD Sbjct: 520 YTSQKVSD 527>NP_775764 Length = 773 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 ++TSK VSD Sbjct: 184 LYTSKAVSD 192>NP_001032208 Length = 857 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 317 LFTSRKGSD 325>NP_001231817 Length = 405 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 317 LFTSRKGSD 325>NP_055729 Length = 804 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 317 LFTSRKGSD 325>XP_006712304 Length = 460 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 321 LFTSRKGSD 329>XP_006712303 Length = 465 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 321 LFTSRKGSD 329>XP_006712302 Length = 782 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 217 LFTSRKGSD 225>XP_006712301 Length = 748 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 183 LFTSRKGSD 191>XP_006712300 Length = 748 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 183 LFTSRKGSD 191>XP_005246116 Length = 808 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 321 LFTSRKGSD 329>XP_006712299 Length = 833 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 321 LFTSRKGSD 329>XP_005246115 Length = 861 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 321 LFTSRKGSD 329>XP_006712298 Length = 882 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 317 LFTSRKGSD 325>XP_006712297 Length = 886 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K SD Sbjct: 321 LFTSRKGSD 329>NP_056197 Length = 2610 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FTSKKVS 8 FTSKK++ Sbjct: 2036 FTSKKIT 2042>NP_001268229 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K +D Sbjct: 146 IFTSRKGAD 154>NP_963848 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 +++KKVSD Sbjct: 22 YSTKKVSD 29>NP_001336 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 +++KKVSD Sbjct: 22 YSTKKVSD 29>NP_958852 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 +++KKVSD Sbjct: 22 YSTKKVSD 29>NP_114152 Length = 911 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K +D Sbjct: 374 IFTSRKGAD 382>XP_005267560 Length = 2563 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FTSKKVS 8 FTSKK++ Sbjct: 1989 FTSKKIT 1995>XP_005267559 Length = 2610 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FTSKKVS 8 FTSKK++ Sbjct: 2036 FTSKKIT 2042>XP_006719323 Length = 455 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 +++KKVSD Sbjct: 60 YSTKKVSD 67>XP_005268745 Length = 773 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 +++KKVSD Sbjct: 60 YSTKKVSD 67>XP_006715912 Length = 679 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VFTSKKVSD 9 +FTS+K +D Sbjct: 142 IFTSRKGAD 150>NP_958853 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 +++KKVSD Sbjct: 22 YSTKKVSD 29>NP_000050 Length = 3418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKKVSD 9 SKKVSD Sbjct: 723 SKKVSD 728>NP_001271282 Length = 675 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VFTSKK 6 +FTSKK Sbjct: 636 IFTSKK 641>NP_001271281 Length = 902 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VFTSKK 6 +FTSKK Sbjct: 872 IFTSKK 877>NP_065826 Length = 1013 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VFTSKK 6 +FTSKK Sbjct: 974 IFTSKK 979>NP_001253977 Length = 926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 VFTSKK 6 +FTSKK Sbjct: 887 IFTSKK 892>NP_055045 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FTSKKVSD 9 FT KKV++ Sbjct: 108 FTGKKVTE 115>NP_066363 Length = 1918 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 FTS+++SD Sbjct: 1748 FTSQELSD 1755>XP_006723899 Length = 1918 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FTSKKVSD 9 FTS+++SD Sbjct: 1748 FTSQELSD 1755>NP_005399 Length = 98 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FTSKKVS 8 F+SKK+S Sbjct: 38 FSSKKIS 44Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.120 0.295 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 373,682 Number of extensions: 484 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |