Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 665 NP_671714 19 665 XP_006715890 19 665 XP_005250160 19 665 XP_005250159 19 665 NP_005106 17 3301 NP_059447 17 3301 NP_653219 16 5631 XP_006711216 16 5631 XP_005244942 16 5631 XP_005244941 16 5631 XP_005244940 16 5631 XP_006711215 16 5631 XP_005244939 16 5631 XP_006711214 16 5631 XP_005244938 16 5631 XP_005244937 16 5631 NP_001135780 16 7355 NP_444256 15 9605 NP_444254 15 9605 NP_444253 15 9605 NP_444255 15 9605 NP_996994 15 9605 XP_005249842 15 9605 XP_005247551 15 9605 XP_005247550 15 9605 XP_006713712 15 9605 XP_005247549 15 9605>NP_005742 Length = 3907 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VDSVVLTES 9 VDSVV+TES Sbjct: 1386 VDSVVITES 1394>NP_671714 Length = 3899 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VDSVVLTES 9 VDSVV+TES Sbjct: 1386 VDSVVITES 1394>XP_006715890 Length = 3860 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VDSVVLTES 9 VDSVV+TES Sbjct: 1386 VDSVVITES 1394>XP_005250160 Length = 3939 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VDSVVLTES 9 VDSVV+TES Sbjct: 1386 VDSVVITES 1394>XP_005250159 Length = 3952 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VDSVVLTES 9 VDSVV+TES Sbjct: 1386 VDSVVITES 1394>NP_005106 Length = 893 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+V+LTE Sbjct: 216 VDAVILTE 223>NP_059447 Length = 893 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+V+LTE Sbjct: 216 VDAVILTE 223>NP_653219 Length = 448 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 411 VDAVVVTE 418>XP_006711216 Length = 392 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 355 VDAVVVTE 362>XP_005244942 Length = 392 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 355 VDAVVVTE 362>XP_005244941 Length = 410 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 373 VDAVVVTE 380>XP_005244940 Length = 426 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 389 VDAVVVTE 396>XP_006711215 Length = 448 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 411 VDAVVVTE 418>XP_005244939 Length = 448 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 411 VDAVVVTE 418>XP_006711214 Length = 464 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 427 VDAVVVTE 434>XP_005244938 Length = 464 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 427 VDAVVVTE 434>XP_005244937 Length = 464 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 VDSVVLTE 8 VD+VV+TE Sbjct: 427 VDAVVVTE 434>NP_001135780 Length = 2156 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 +D +VLTE+ Sbjct: 1454 LDDIVLTEN 1462>NP_444256 Length = 1794 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 VDS+ LTE+ Sbjct: 24 VDSMPLTEA 32>NP_444254 Length = 1845 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 VDS+ LTE+ Sbjct: 24 VDSMPLTEA 32>NP_444253 Length = 1914 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 VDS+ LTE+ Sbjct: 24 VDSMPLTEA 32>NP_444255 Length = 1863 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 VDS+ LTE+ Sbjct: 24 VDSMPLTEA 32>NP_996994 Length = 923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DSVVLTES 9 D V+LTE+ Sbjct: 61 DDVILTET 68>XP_005249842 Length = 923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DSVVLTES 9 D V+LTE+ Sbjct: 61 DDVILTET 68>XP_005247551 Length = 1855 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 VDS+ LTE+ Sbjct: 34 VDSMPLTEA 42>XP_005247550 Length = 1856 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 VDS+ LTE+ Sbjct: 34 VDSMPLTEA 42>XP_006713712 Length = 1923 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 VDS+ LTE+ Sbjct: 34 VDSMPLTEA 42>XP_005247549 Length = 1924 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VDSVVLTES 9 VDS+ LTE+ Sbjct: 34 VDSMPLTEA 42Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.118 0.266 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 359,316 Number of extensions: 378 Number of successful extensions: 28 Number of sequences better than 10000.0: 28 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |