Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 509 NP_001075109 20 509 NP_899243 17 3301 NP_001099010 17 3301 NP_001186197 17 3301 NP_001186195 17 3301 NP_963291 17 3301 NP_963290 17 3301 XP_006720135 17 3301 XP_006720134 17 3301 XP_006720133 17 3301 XP_006718418 17 3301 XP_005253239 17 3301 XP_005253238 17 3301 XP_006718417 17 3301 XP_005253237 17 3301 XP_005253236 17 3301 NP_001186196 17 3301 NP_003637 17 3301 NP_002323 16 5631 NP_001265122 16 5631 NP_001265123 16 5631 NP_938148 16 5631 NP_001609 16 7355 NP_076924 16 7355 NP_001186711 15 9605 XP_006726477 15 9605 XP_006726476 15 9605 XP_003960392 15 9605 XP_005260625 15 9605 XP_005271706 15 9605 XP_006718960 15 9605 XP_006718959 15 9605 XP_006714494 15 9605 XP_006714493 15 9605 XP_373030 15 9605 XP_006710222 15 9605 XP_006710221 15 9605 XP_001717475 15 9605>NP_008835 Length = 4128 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VAVSRGSKD 9 VAV+RGSKD Sbjct: 4078 VAVARGSKD 4086>NP_001075109 Length = 4097 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VAVSRGSKD 9 VAV+RGSKD Sbjct: 4047 VAVARGSKD 4055>NP_899243 Length = 1977 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VAVSRGSKD 9 ++++RGSKD Sbjct: 809 LSIARGSKD 817>NP_001099010 Length = 1117 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 1019 AVSTGSKD 1026>NP_001186197 Length = 906 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 808 AVSTGSKD 815>NP_001186195 Length = 934 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 831 AVSTGSKD 838>NP_963291 Length = 933 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 835 AVSTGSKD 842>NP_963290 Length = 945 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 847 AVSTGSKD 854>XP_006720135 Length = 1454 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VAVSRGSKD 9 ++++RGSKD Sbjct: 809 LSIARGSKD 817>XP_006720134 Length = 1579 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VAVSRGSKD 9 ++++RGSKD Sbjct: 809 LSIARGSKD 817>XP_006720133 Length = 1969 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VAVSRGSKD 9 ++++RGSKD Sbjct: 809 LSIARGSKD 817>XP_006718418 Length = 933 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 835 AVSTGSKD 842>XP_005253239 Length = 934 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 836 AVSTGSKD 843>XP_005253238 Length = 946 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 848 AVSTGSKD 855>XP_006718417 Length = 1118 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 1020 AVSTGSKD 1027>XP_005253237 Length = 1160 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 1062 AVSTGSKD 1069>XP_005253236 Length = 1161 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 1063 AVSTGSKD 1070>NP_001186196 Length = 928 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 830 AVSTGSKD 837>NP_003637 Length = 929 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS GSKD Sbjct: 831 AVSTGSKD 838>NP_002323 Length = 4544 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 ++ RGSKD Sbjct: 2119 SIKRGSKD 2126>NP_001265122 Length = 830 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSRGSKD 9 VS+GSKD Sbjct: 72 VSQGSKD 78>NP_001265123 Length = 847 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSRGSKD 9 VS+GSKD Sbjct: 89 VSQGSKD 95>NP_938148 Length = 944 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSRGSKD 9 VS+GSKD Sbjct: 186 VSQGSKD 192>NP_001609 Length = 1014 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AVSRGSKD 9 AVS+GS D Sbjct: 719 AVSQGSSD 726>NP_076924 Length = 272 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AVSRGSK 8 AVSRG+K Sbjct: 95 AVSRGAK 101>NP_001186711 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VAVSRGS 7 +AVSRGS Sbjct: 21 LAVSRGS 27>XP_006726477 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 350 IAKSQGSRD 358>XP_006726476 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 350 IAKSQGSRD 358>XP_003960392 Length = 1826 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 383 IAKSQGSRD 391>XP_005260625 Length = 121 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VSRGSK 8 VSRGSK Sbjct: 111 VSRGSK 116>XP_005271706 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSRGSKD 9 V+RGS+D Sbjct: 4 VARGSRD 10>XP_006718960 Length = 354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSRGSKD 9 V+RGS+D Sbjct: 2 VARGSRD 8>XP_006718959 Length = 356 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSRGSKD 9 V+RGS+D Sbjct: 4 VARGSRD 10>XP_006714494 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 350 IAKSQGSRD 358>XP_006714493 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 350 IAKSQGSRD 358>XP_373030 Length = 1826 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 383 IAKSQGSRD 391>XP_006710222 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 350 IAKSQGSRD 358>XP_006710221 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 350 IAKSQGSRD 358>XP_001717475 Length = 1826 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAVSRGSKD 9 +A S+GS+D Sbjct: 383 IAKSQGSRD 391Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.120 0.296 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 571,357 Number of extensions: 845 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |