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Blast-Search of mutated query peptide against human proteome

BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_000042                                                              19     665
XP_006718907                                                           19     665
XP_006718906                                                           19     665
XP_005271619                                                           19     665
XP_005271618                                                           19     665
NP_001277239                                                           16    7355
NP_001277238                                                           16    7355
NP_001894                                                              16    7355
NP_001277241                                                           16    7355
NP_001277236                                                           16    7355
NP_149055                                                              16    7355
NP_055907                                                              16    7355
XP_005255242                                                           16    7355
XP_005255241                                                           16    7355
XP_005255240                                                           16    7355
XP_005255239                                                           16    7355
XP_005271956                                                           16    7355
XP_006714599                                                           16    7355
XP_005246793                                                           16    7355
XP_005246792                                                           16    7355
XP_005246791                                                           16    7355
XP_005246790                                                           16    7355
XP_005246789                                                           16    7355
NP_065876                                                              15    9605
XP_006711671                                                           15    9605
XP_006711670                                                           15    9605
XP_005245629                                                           15    9605

>NP_000042
          Length = 3056

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VARIIHAAT 9
           VARIIHA T
Sbjct: 187 VARIIHAVT 195



>XP_006718907
          Length = 3050

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VARIIHAAT 9
           VARIIHA T
Sbjct: 187 VARIIHAVT 195



>XP_006718906
          Length = 3056

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VARIIHAAT 9
           VARIIHA T
Sbjct: 187 VARIIHAVT 195



>XP_005271619
          Length = 3056

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VARIIHAAT 9
           VARIIHA T
Sbjct: 187 VARIIHAVT 195



>XP_005271618
          Length = 3056

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VARIIHAAT 9
           VARIIHA T
Sbjct: 187 VARIIHAVT 195



>NP_001277239
          Length = 783

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   ARIIHAAT 9
           AR+IH  T
Sbjct: 427 ARVIHVVT 434



>NP_001277238
          Length = 803

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   ARIIHAAT 9
           AR+IH  T
Sbjct: 447 ARVIHVVT 454



>NP_001894
          Length = 906

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   ARIIHAAT 9
           AR+IH  T
Sbjct: 550 ARVIHVVT 557



>NP_001277241
          Length = 536

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   ARIIHAAT 9
           AR+IH  T
Sbjct: 180 ARVIHVVT 187



>NP_001277236
          Length = 841

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   ARIIHAAT 9
           AR+IH  T
Sbjct: 550 ARVIHVVT 557



>NP_149055
          Length = 637

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   VARIIH 6
           VARIIH
Sbjct: 179 VARIIH 184



>NP_055907
          Length = 3661

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1    VARIIHA 7
            VAR++HA
Sbjct: 2929 VARLLHA 2935



>XP_005255242
          Length = 3609

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1    VARIIHA 7
            VAR++HA
Sbjct: 2877 VARLLHA 2883



>XP_005255241
          Length = 3637

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1    VARIIHA 7
            VAR++HA
Sbjct: 2905 VARLLHA 2911



>XP_005255240
          Length = 3663

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1    VARIIHA 7
            VAR++HA
Sbjct: 2931 VARLLHA 2937



>XP_005255239
          Length = 3689

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1    VARIIHA 7
            VAR++HA
Sbjct: 2957 VARLLHA 2963



>XP_005271956
          Length = 536

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   ARIIHAAT 9
           AR+IH  T
Sbjct: 180 ARVIHVVT 187



>XP_006714599
          Length = 906

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   ARIIHAAT 9
           AR+IH  T
Sbjct: 550 ARVIHVVT 557



>XP_005246793
          Length = 562

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   VARIIH 6
           VARIIH
Sbjct: 135 VARIIH 140



>XP_005246792
          Length = 579

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   VARIIH 6
           VARIIH
Sbjct: 152 VARIIH 157



>XP_005246791
          Length = 593

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   VARIIH 6
           VARIIH
Sbjct: 179 VARIIH 184



>XP_005246790
          Length = 602

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   VARIIH 6
           VARIIH
Sbjct: 135 VARIIH 140



>XP_005246789
          Length = 613

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   VARIIH 6
           VARIIH
Sbjct: 179 VARIIH 184



>NP_065876
          Length = 1269

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 1   VARIIHA 7
           VAR++H+
Sbjct: 412 VARVVHS 418



>XP_006711671
          Length = 2153

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2   ARIIHA 7
           ARI+HA
Sbjct: 277 ARIVHA 282



>XP_006711670
          Length = 2161

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2   ARIIHA 7
           ARI+HA
Sbjct: 277 ARIVHA 282



>XP_005245629
          Length = 2164

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2   ARIIHA 7
           ARI+HA
Sbjct: 277 ARIVHA 282



  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.337    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 431,095
Number of extensions: 432
Number of successful extensions: 27
Number of sequences better than 10000.0: 27
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 27
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.6 bits)
S2: 28 (15.4 bits)