Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 19 665 XP_006718907 19 665 XP_006718906 19 665 XP_005271619 19 665 XP_005271618 19 665 NP_001277239 16 7355 NP_001277238 16 7355 NP_001894 16 7355 NP_001277241 16 7355 NP_001277236 16 7355 NP_149055 16 7355 NP_055907 16 7355 XP_005255242 16 7355 XP_005255241 16 7355 XP_005255240 16 7355 XP_005255239 16 7355 XP_005271956 16 7355 XP_006714599 16 7355 XP_005246793 16 7355 XP_005246792 16 7355 XP_005246791 16 7355 XP_005246790 16 7355 XP_005246789 16 7355 NP_065876 15 9605 XP_006711671 15 9605 XP_006711670 15 9605 XP_005245629 15 9605>NP_000042 Length = 3056 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VARIIHAAT 9 VARIIHA T Sbjct: 187 VARIIHAVT 195>XP_006718907 Length = 3050 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VARIIHAAT 9 VARIIHA T Sbjct: 187 VARIIHAVT 195>XP_006718906 Length = 3056 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VARIIHAAT 9 VARIIHA T Sbjct: 187 VARIIHAVT 195>XP_005271619 Length = 3056 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VARIIHAAT 9 VARIIHA T Sbjct: 187 VARIIHAVT 195>XP_005271618 Length = 3056 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VARIIHAAT 9 VARIIHA T Sbjct: 187 VARIIHAVT 195>NP_001277239 Length = 783 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ARIIHAAT 9 AR+IH T Sbjct: 427 ARVIHVVT 434>NP_001277238 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ARIIHAAT 9 AR+IH T Sbjct: 447 ARVIHVVT 454>NP_001894 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ARIIHAAT 9 AR+IH T Sbjct: 550 ARVIHVVT 557>NP_001277241 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ARIIHAAT 9 AR+IH T Sbjct: 180 ARVIHVVT 187>NP_001277236 Length = 841 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ARIIHAAT 9 AR+IH T Sbjct: 550 ARVIHVVT 557>NP_149055 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VARIIH 6 VARIIH Sbjct: 179 VARIIH 184>NP_055907 Length = 3661 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VARIIHA 7 VAR++HA Sbjct: 2929 VARLLHA 2935>XP_005255242 Length = 3609 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VARIIHA 7 VAR++HA Sbjct: 2877 VARLLHA 2883>XP_005255241 Length = 3637 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VARIIHA 7 VAR++HA Sbjct: 2905 VARLLHA 2911>XP_005255240 Length = 3663 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VARIIHA 7 VAR++HA Sbjct: 2931 VARLLHA 2937>XP_005255239 Length = 3689 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VARIIHA 7 VAR++HA Sbjct: 2957 VARLLHA 2963>XP_005271956 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ARIIHAAT 9 AR+IH T Sbjct: 180 ARVIHVVT 187>XP_006714599 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ARIIHAAT 9 AR+IH T Sbjct: 550 ARVIHVVT 557>XP_005246793 Length = 562 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VARIIH 6 VARIIH Sbjct: 135 VARIIH 140>XP_005246792 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VARIIH 6 VARIIH Sbjct: 152 VARIIH 157>XP_005246791 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VARIIH 6 VARIIH Sbjct: 179 VARIIH 184>XP_005246790 Length = 602 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VARIIH 6 VARIIH Sbjct: 135 VARIIH 140>XP_005246789 Length = 613 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VARIIH 6 VARIIH Sbjct: 179 VARIIH 184>NP_065876 Length = 1269 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 VARIIHA 7 VAR++H+ Sbjct: 412 VARVVHS 418>XP_006711671 Length = 2153 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ARIIHA 7 ARI+HA Sbjct: 277 ARIVHA 282>XP_006711670 Length = 2161 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ARIIHA 7 ARI+HA Sbjct: 277 ARIVHA 282>XP_005245629 Length = 2164 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ARIIHA 7 ARI+HA Sbjct: 277 ARIVHA 282Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.132 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 431,095 Number of extensions: 432 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |